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Accession: PRJNA762299 ID: 762299

Exploring the resistome and virulome in aquaculture WGS

Exploring the resistome and virulome in aquaculture
AccessionPRJNA762299
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsSalgueiro V et al., "Snapshot of resistome, virulome and mobilome in aquaculture.", Sci Total Environ, 2023 Dec 20;905:166351
SubmissionRegistration date: 10-Sep-2021
National Institute of Health Dr Ricardo Jorge
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)66
Publications
PubMed1
Other datasets
BioSample66
Assembly66
Assembly details:
Assembly levelNumber of Assemblies
59
7
66
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_021441305.1ContigJAKCNX000000000SAMN24245014
INSAq241
GCA_021441165.1ScaffoldJAKCNC000000000SAMN24244993
INSAq178
GCA_021440765.1ScaffoldJAKCNV000000000SAMN24245012
INSAq239
GCA_021441425.1ScaffoldJAKCNH000000000SAMN24244998
INSAq193
GCA_021441265.1ScaffoldJAKCND000000000SAMN24244994
INSAq180
GCA_021441245.1ScaffoldJAKCNB000000000SAMN24244992
INSAq177
GCA_021440455.1ScaffoldJAKCMZ000000000SAMN24244988
INSAq169
GCA_021440865.1ScaffoldJAKCNI000000000SAMN24244999
INSAq195
GCA_021441345.1ScaffoldJAKCNU000000000SAMN24245011
INSAq237
GCA_021440705.1ScaffoldJAKCMM000000000SAMN24244975
INSAq43
GCA_021440745.1ScaffoldJAKCOT000000000SAMN24245036
INSAq485
GCA_021440885.1ScaffoldJAKCOS000000000SAMN24245035
INSAq424
GCA_021440245.1ScaffoldJAKCNT000000000SAMN24245010
INSAq234
GCA_021440515.1ScaffoldJAKCMV000000000SAMN24244984
INSAq146
GCA_021440625.1ScaffoldJAKCMQ000000000SAMN24244979
INSAq99
GCA_021440565.1ScaffoldJAKCMR000000000SAMN24244980
INSAq107
GCA_021440555.1ScaffoldJAKCMT000000000SAMN24244982
INSAq140
GCA_021441115.1ScaffoldJAKCMK000000000SAMN24244973
INSAq21
GCA_021441385.1ScaffoldJAKCOL000000000SAMN24245028
INSAq321
GCA_021441285.1ScaffoldJAKCOM000000000SAMN24245029
INSAq322
GCA_021441215.1ScaffoldJAKCON000000000SAMN24245030
INSAq324
GCA_021441205.1ScaffoldJAKCMY000000000SAMN24244987
INSAq163
GCA_021441095.1ScaffoldJAKCNE000000000SAMN24244995
INSAq183
GCA_021440835.1ScaffoldJAKCOH000000000SAMN24245024
INSAq316
GCA_021440825.1ScaffoldJAKCOK000000000SAMN24245027
INSAq320
GCA_021440945.1ScaffoldJAKCOJ000000000SAMN24245026
INSAq319
GCA_021440905.1ScaffoldJAKCOR000000000SAMN24245034
INSAq354
GCA_021440155.1ScaffoldJAKCOI000000000SAMN24245025
INSAq317
GCA_021440275.1ScaffoldJAKCMW000000000SAMN24244985
INSAq159
GCA_021440285.1ContigJAKCOA000000000SAMN24245017
INSAq249
GCA_021440365.1ContigJAKCNQ000000000SAMN24245007
INSAq225
GCA_021440185.1ScaffoldJAKCNF000000000SAMN24244996
INSAq191
GCA_021441105.1ScaffoldJAKCNK000000000SAMN24245001
INSAq204
GCA_021441065.1ScaffoldJAKCNM000000000SAMN24245003
INSAq215
GCA_021440495.1ContigJAKCNP000000000SAMN24245006
INSAq219
GCA_021440445.1ScaffoldJAKCNO000000000SAMN24245005
INSAq217
GCA_021440665.1ScaffoldJAKCMN000000000SAMN24244976
INSAq73
GCA_021440485.1ScaffoldJAKCML000000000SAMN24244974
INSAq40
GCA_021440585.1ScaffoldJAKCMS000000000SAMN24244981
INSAq121
GCA_021440345.1ScaffoldJAKCNS000000000SAMN24245009
INSAq229
GCA_021440395.1ScaffoldJAKCMX000000000SAMN24244986
INSAq160
GCA_021440545.1ScaffoldJAKCMU000000000SAMN24244983
INSAq143
GCA_021441185.1ScaffoldJAKCNA000000000SAMN24244991
INSAq176
GCA_022016035.1ScaffoldJAKMAH000000000SAMN24244990
INSAq172
GCA_021441045.1ScaffoldJAKCNN000000000SAMN24245004
INSAq216
GCA_021441025.1ScaffoldJAKCNJ000000000SAMN24245000
INSAq197
GCA_021440995.1ContigJAKCNG000000000SAMN24244997
INSAq192
GCA_021440385.1ScaffoldJAKCNZ000000000SAMN24245016
INSAq246
GCA_021441325.1ScaffoldJAKCOF000000000SAMN24245022
INSAq311
GCA_021440985.1ScaffoldJAKCOO000000000SAMN24245031
INSAq326
GCA_021440775.1ScaffoldJAKCOG000000000SAMN24245023
INSAq315
GCA_021441395.1ScaffoldJAKCNW000000000SAMN24245013
INSAq240
GCA_021440425.1ScaffoldJAKCNR000000000SAMN24245008
INSAq228
GCA_021441085.1ScaffoldJAKCNL000000000SAMN24245002
INSAq207
GCA_021440805.1ScaffoldJAKCOW000000000SAMN24245039
INSAq497
GCA_021440725.1ScaffoldJAKCOV000000000SAMN24245038
INSAq495
GCA_021440145.1ScaffoldJAKCOU000000000SAMN24245037
INSAq494
GCA_021441365.1ScaffoldJAKCOE000000000SAMN24245021
INSAq258
GCA_021440265.1ScaffoldJAKCNY000000000SAMN24245015
INSAq243
GCA_021440925.1ScaffoldJAKCOP000000000SAMN24245032
INSAq334
GCA_021440935.1ScaffoldJAKCOQ000000000SAMN24245033
INSAq347
GCA_021440655.1ScaffoldJAKCMO000000000SAMN24244977
INSAq87
GCA_021440645.1ContigJAKCMP000000000SAMN24244978
INSAq93
GCA_021441435.1ScaffoldJAKCOD000000000SAMN24245020
INSAq252
GCA_021440305.1ScaffoldJAKCOC000000000SAMN24245019
INSAq251
GCA_021440175.1ContigJAKCOB000000000SAMN24245018
INSAq250

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