U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA776871 ID: 776871

Porphyrio hochstetteri (takahe) genome, bPorHoc1

See Genome Information for Porphyrio hochstetteri
The takahe (Porphyrio hochstetteri) is a flightless bird indigenous to New Zealand, and the largest living member of the rail family. Due to over hunting, they were once thought extinct by the late1890s, until 50 years later a small isolated population was found. The is now an active breeding program for their conservation. This juvenile female is from trio of samples (parents) breed and collected to create a high-quality reference genome for both maternal and paternal haplotypes. The juvenile was bred in captivity. Sample collection was conducted by Glen Greaves, in a projected coordinated and supported by Lara Urban, Andrew Digby, Daryl Eason, Deidre Vercoe, and Takahe Recovery Programme. Blood from the female was used to create high-quality reference genome assemblies of each haplotype. More...
AccessionPRJNA776871
TypeUmbrella project
OrganismPorphyrio hochstetteri[Taxonomy ID: 439704]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Gruiformes; Rallidae; Porphyrio; Porphyrio hochstetteri
SubmissionRegistration date: 1-Nov-2021
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)37
WGS master2
SRA Experiments13
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases1,003
Data volume, Tbytes0.33
This project encompasses the following 3 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

1
1
1
3
BioProject
accession
Assembly
level
NameTitle
PRJNA774331 ChromosomesPorphyrio hochstetteriPorphyrio hochstetteri (takahe) genome, bPorHoc1, maternal haplotype (Vertebrate Genomes Project)
PRJNA774332 ScaffoldsPorphyrio hochstetteriPorphyrio hochstetteri (takahe) genome, bPorHoc1, paternal haplotype (Vertebrate Genomes Project)
PRJNA1005968 SRA or TracePorphyrio hochstetteri (takahe) genome, bPorHoc1, sequence dataPorphyrio hochstetteri (takahe) genome, bPorHoc1, sequence data (G10K)

Supplemental Content

Recent activity

  • mSciCar1
    mSciCar1
    Sciurus carolinensis (grey squirrel)
    BioProject
  • fBarBab
    fBarBab
    Barbus barbus (barbel)
    BioProject
  • Astatotilapia calliptera
    Astatotilapia calliptera
    Astatotilapia calliptera (Eastern happy) genome assembly, fAstCal1.2
    BioProject

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center