ID 779265 - BioProject

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Accession: PRJNA779265 ID: 779265

Genome resources and taxonomic validation of 89 Xanthomonas strains

Whole genome sequencing of 89 strains of Xanthomonas isolated worldwide. Majority (80)of the strains are from Canada and USA and from tomato and pepper.

Accession	PRJNA779265
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Monitoring an invasive bacterial pathogen (Clavibacter michiganensis subsp. nebraskensis) of corn using next-generation sequencing" (Grant ID J-000409, Agriculture and Agri-Food Canada) "Mobilization of Biological collections (BioMob) Work Package 2" (Grant ID J-001564, Agriculture and Agri-Food Canada) "Fungal and bacterial biosystematics - bridging taxonomy and "omics" technology in agricultural research and regulation" (Grant ID J-002272, Agriculture and Agri-Food Canada)
Submission	Registration date: 10-Nov-2021 Ottawa Research and Development Center
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	89
SRA Experiments	89
Other datasets
BioSample	89
Assembly	89

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

89
89

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_020880475.1	JAJITF000000000	SAMN23026112	Xcz 5	Xanthomonas arboricola
GCA_020879215.1	JAJIUZ000000000	SAMN23026065	DC06P2B	Xanthomonas arboricola
GCA_020879405.1	JAJITI000000000	SAMN23026109	71	Xanthomonas campestris
GCA_020880515.1	JAJIVB000000000	SAMN23026063	DC06T4A	Xanthomonas campestris
GCA_020880535.1	JAJIVA000000000	SAMN23026064	Xcv DC 91-1	Xanthomonas campestris
GCA_020880755.1	JAJITE000000000	SAMN23026113	Xcz13	Xanthomonas cannabis
GCA_020879395.1	JAJITK000000000	SAMN23026107	Xc70	Xanthomonas citri pv. fuscans
GCA_020879475.1	JAJITO000000000	SAMN23026103	G55	Xanthomonas citri pv. fuscans
GCA_020879255.1	JAJITN000000000	SAMN23026104	X203	Xanthomonas codiaei
GCA_020879265.1	JAJIUS000000000	SAMN23026072	Xv 72	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879155.1	JAJIUR000000000	SAMN23026073	Xv 79	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879415.1	JAJITJ000000000	SAMN23026108	FB570	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879485.1	JAJITV000000000	SAMN23026095	E3	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879655.1	JAJIWG000000000	SAMN23026032	Xcv DC 97 P1A	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879635.1	JAJIWE000000000	SAMN23026034	Xcv DC 93-9	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879875.1	JAJIWD000000000	SAMN23026035	Xcv DC 96-4	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879845.1	JAJIWC000000000	SAMN23026036	Xcv DC 96-5	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879815.1	JAJIWB000000000	SAMN23026037	Xcv DC 98 P2A	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879825.1	JAJIWA000000000	SAMN23026038	Xcv DC 93-6	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879795.1	JAJIVY000000000	SAMN23026040	DC99P1B1	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879775.1	JAJIVZ000000000	SAMN23026039	Xcv DC 96-1	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879745.1	JAJIWI000000000	SAMN23026030	Xcv DC 96-3	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020879135.1	JAJIVX000000000	SAMN23026041	Ps-7	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880635.1	JAJIVS000000000	SAMN23026046	Xcv DC 97 P2A	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880895.1	JAJIVU000000000	SAMN23026044	Xcv DC 97 P3A	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880855.1	JAJIVV000000000	SAMN23026043	DC99P1A1	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880835.1	JAJIWH000000000	SAMN23026031	Xcv DC 93-7	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880575.1	JAJIVT000000000	SAMN23026045	Xcv DC 96-2	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880435.1	JAJIUH000000000	SAMN23026083	75-3	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880415.1	JAJIUJ000000000	SAMN23026081	ATCC 11633	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880395.1	JAJIVQ000000000	SAMN23026048	Xcv Sspep 92	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880375.1	JAJIUG000000000	SAMN23026084	85-16	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880345.1	JAJIVR000000000	SAMN23026047	71-21	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880315.1	JAJIWF000000000	SAMN23026033	Xcv DC 93-8	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880275.1	JAJIVP000000000	SAMN23026049	Ps-1	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880235.1	JAJIVW000000000	SAMN23026042	Xv157	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880165.1	JAJIUF000000000	SAMN23026085	86-2	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880135.1	JAJIUC000000000	SAMN23026088	87-21	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880115.1	JAJIUE000000000	SAMN23026086	86-22	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880035.1	JAJIUD000000000	SAMN23026087	86-46	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880045.1	JAJIUB000000000	SAMN23026089	87-47	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020880015.1	JAJIUA000000000	SAMN23026090	89-10	Xanthomonas euvesicatoria pv. euvesicatoria
GCA_020882895.1	JAJJBQ000000000	SAMN23026102	X60	Xanthomonas euvesicatoria
GCA_020879965.1	JAJIUW000000000	SAMN23026068	DC99T9A	Xanthomonas hortorum pv. gardneri
GCA_020879935.1	JAJIUV000000000	SAMN23026069	DC99T9B	Xanthomonas hortorum pv. gardneri
GCA_020880195.1	JAJIUX000000000	SAMN23026067	DC99T6A	Xanthomonas hortorum pv. gardneri
GCA_020879895.1	JAJITU000000000	SAMN23026096	Xg101	Xanthomonas hortorum pv. gardneri
GCA_020880095.1	JAJIVJ000000000	SAMN23026055	DC05T3	Xanthomonas hortorum pv. gardneri
GCA_020880285.1	JAJIVN000000000	SAMN23026051	MSU 1140	Xanthomonas hortorum pv. gardneri
GCA_020880245.1	JAJIVO000000000	SAMN23026050	MSU 1138	Xanthomonas hortorum pv. gardneri
GCA_020880455.1	JAJIVI000000000	SAMN23026056	DC06T5	Xanthomonas hortorum pv. gardneri
GCA_020880935.1	JAJIVM000000000	SAMN23026052	DC00T17A	Xanthomonas hortorum pv. gardneri
GCA_020880915.1	JAJIVL000000000	SAMN23026053	DC04T7	Xanthomonas hortorum pv. gardneri
GCA_020880795.1	JAJIVK000000000	SAMN23026054	DC05T4	Xanthomonas hortorum pv. gardneri
GCA_020879455.1	JAJITM000000000	SAMN23026105	X56	Xanthomonas hortorum pv. gardneri
GCA_020879495.1	JAJITQ000000000	SAMN23026100	IBSBF1783	Xanthomonas hortorum pv. gardneri
GCA_020879535.1	JAJITL000000000	SAMN23026106	Xc 69	Xanthomonas hortorum pv. gardneri
GCA_020879315.1	JAJITS000000000	SAMN23026098	Xg 451	Xanthomonas hortorum pv. gardneri
GCA_020879305.1	JAJITR000000000	SAMN23026099	IBSBF1782	Xanthomonas hortorum pv. gardneri
GCA_020879365.1	JAJITT000000000	SAMN23026097	Xg 444	Xanthomonas hortorum pv. gardneri
GCA_020879225.1	JAJIUY000000000	SAMN23026066	DC98T7A	Xanthomonas hortorum pv. gardneri
GCA_020879295.1	JAJIUU000000000	SAMN23026070	DC00T15A	Xanthomonas perforans
GCA_020879555.1	JAJITW000000000	SAMN23026094	97-2	Xanthomonas perforans
GCA_020879735.1	JAJIWK000000000	SAMN23026028	DC01T37B	Xanthomonas perforans
GCA_020879715.1	JAJIWN000000000	SAMN23026025	DC05T6	Xanthomonas perforans
GCA_020879695.1	JAJIWM000000000	SAMN23026026	DC01T1A	Xanthomonas perforans
GCA_020879675.1	JAJIWL000000000	SAMN23026027	DC01T40A	Xanthomonas perforans
GCA_020880335.1	JAJIWJ000000000	SAMN23026029	DC01T3A	Xanthomonas perforans
GCA_020880155.1	JAJIUT000000000	SAMN23026071	DC00T16A	Xanthomonas perforans
GCA_020879955.1	JAJITZ000000000	SAMN23026091	Xv 1220	Xanthomonas perforans
GCA_020881595.1	JAJITY000000000	SAMN23026092	Xv 1484	Xanthomonas perforans
GCA_020880215.1	JAJITH000000000	SAMN23026110	JB1	Xanthomonas phaseoli
GCA_020879615.1	JAJITP000000000	SAMN23026101	X40	Xanthomonas phaseoli
GCA_020880735.1	JAJITG000000000	SAMN23026111	ATCC 19319	Xanthomonas translucens pv. translucens
GCA_020880745.1	JAJIVE000000000	SAMN23026060	Xcv DC 93-5	Xanthomonas vesicatoria
GCA_020880615.1	JAJIVD000000000	SAMN23026061	Xcv DC 97 T16A	Xanthomonas vesicatoria
GCA_020880595.1	JAJIUN000000000	SAMN23026077	Bv 5-4A	Xanthomonas vesicatoria
GCA_020880925.1	JAJIVF000000000	SAMN23026059	Xcv DC 97 T16B	Xanthomonas vesicatoria
GCA_020880875.1	JAJIVG000000000	SAMN23026058	Xcv DC 98 T1A	Xanthomonas vesicatoria
GCA_020880075.1	JAJIUK000000000	SAMN23026080	ATCC 11551	Xanthomonas vesicatoria
GCA_020879975.1	JAJIUI000000000	SAMN23026082	71-4	Xanthomonas vesicatoria
GCA_020879915.1	JAJIUM000000000	SAMN23026078	Bv 5-4B	Xanthomonas vesicatoria
GCA_020880495.1	JAJIUO000000000	SAMN23026076	Bv 5-3A	Xanthomonas vesicatoria
GCA_020880545.1	JAJIVC000000000	SAMN23026062	Xcv DC 97 T18A	Xanthomonas vesicatoria
GCA_020879595.1	JAJITX000000000	SAMN23026093	MME	Xanthomonas vesicatoria
GCA_020879575.1	JAJIVH000000000	SAMN23026057	DC01T36A	Xanthomonas vesicatoria
GCA_020879355.1	JAJIUL000000000	SAMN23026079	Bv 20-3A	Xanthomonas vesicatoria
GCA_020879165.1	JAJIUQ000000000	SAMN23026074	BA 27-1	Xanthomonas vesicatoria
GCA_020879145.1	JAJIUP000000000	SAMN23026075	BA 29-1	Xanthomonas vesicatoria

SRA Data Details

Parameter	Value
Data volume, Gbases	48
Data volume, Mbytes	22140

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Genome resources and taxonomic validation of 89 Xanthomonas strains

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