Solanum (ID 779368) - BioProject

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Accession: PRJNA779368 ID: 779368

Solanum

Genome sequencing of Solanum genomes and the cold regulated transcriptome of a cold tolerant Solanum species

Assembly of nuclear and organelle genomes of each sequenced individual of potato, along with annotation and structural variation analysis. More...

Accession	PRJNA779368
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 10-Nov-2021 McGill University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	65
WGS master	30
Genomic DNA	35
SRA Experiments	95
Protein Sequences	3010
Other datasets
BioSample	110
Assembly	30

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

30
30

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_036250505.1	JAJOOR000000000	SAMN23440978	CIP762297.201	Solanum acaule
GCA_036250465.1	JAJOOQ000000000	SAMN23440979	CIP762446.201	Solanum acaule
GCA_029582625.1	JAJOOJ000000000	SAMN23440986	CIP761353.009	Solanum boliviense
GCA_029582585.1	JAJOOI000000000	SAMN23440987	CIP760368.015	Solanum bukasovii
GCA_036250365.1	JAJONV000000000	SAMN23441003	N/A	Solanum bulbocastanum
GCA_029582705.1	JAJOOP000000000	SAMN23440980	CIP760917.1	Solanum chacoense
GCA_029582725.1	JAJOOS000000000	SAMN23440977	CIP762573.219	Solanum chiquidenum
GCA_029582665.1	JAJOOM000000000	SAMN23440983	CIP761080.201	Solanum commersonii
GCA_029582365.1	JAJONU000000000	SAMN23441004	N/A	Solanum commersonii
GCA_029582505.1	JAJOOA000000000	SAMN23440996	Winay	Solanum commersonii x Solanum andigenum
GCA_029582245.1	JAJONR000000000	SAMN23441007	16-1	Solanum etuberosum
GCA_029582405.1	JAJONY000000000	SAMN23441000	N/A	Solanum gandarillasii
GCA_029582605.1	JAJOOH000000000	SAMN23440988	CIP761498.010	Solanum gracilifrons
GCA_036250525.1	JAJOOL000000000	SAMN23440984	CIP-Matilde	Solanum hybrid cultivar
GCA_029582565.1	JAJOOG000000000	SAMN23440989	CIP761359.032	Solanum infundibuliforme
GCA_029582545.1	JAJOOF000000000	SAMN23440990	CIP762830.057	Solanum lignicaule
GCA_029582645.1	JAJOON000000000	SAMN23440982	CIP761403.208	Solanum megistacrolobum
GCA_036250385.1	JAJONQ000000000	SAMN23441008	95x4-3	Solanum microdontum
GCA_029582345.1	JAJONT000000000	SAMN23441005	backcross clone	Solanum oplocense x Solanum tuberosum
GCA_029582445.1	JAJONZ000000000	SAMN23440997	CIP762126.217	Solanum paucissectum
GCA_029582425.1	JAJONX000000000	SAMN23441001	N/A	Solanum pinnatisectum
GCA_029582685.1	JAJOOO000000000	SAMN23440981	CIP761868.202	Solanum piurae
GCA_036250405.1	JAJOOE000000000	SAMN23440992	CIP761645.014	Solanum raphanifolium
GCA_029582215.1	JAKRZT000000000	SAMN23440998	CIP760147.7	Solanum sparsipilum
GCA_029582525.1	JAJOOD000000000	SAMN23440993	CIP762866.038	Solanum tacnaense
GCA_029582465.1	JAJOOC000000000	SAMN23440994	CIP762866.026	Solanum tacnaense
GCA_029582485.1	JAJOOB000000000	SAMN23440995	CIP762833.025	Solanum tarapatanum
GCA_029582385.1	JAJONW000000000	SAMN23441002	N/A	Solanum tarijense
GCA_029582315.1	JAJONS000000000	SAMN23441006	somatic hybrid backcross clone	Solanum tarnii x Solanum tuberosum
GCA_036250485.1	JAJOOK000000000	SAMN23440985	CIP392650.12	Solanum tuberosum

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	15

SRA Data Details

Parameter	Value
Data volume, Gbases	5,190
Data volume, Tbytes	1.75

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Solanum

Genome sequencing of Solanum genomes and the cold regulated transcriptome of a cold tolerant Solanum species

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