Lactic acid bacteria (ID 783265) - BioProject

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Accession: PRJNA783265 ID: 783265

Lactic acid bacteria

WGS: Florfenicol-resistant lactic acid bacteria from cattle at slaughter

Short- and long-read sequencing of optrA, poxtA, or cfr-carrying florfenicol-resistant Aeroccus, Enteroccous, Lactobacillus, and Vagococcus from cattle at slaughter in Switzerland

Accession	PRJNA783265
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Published online: Nüesch-Inderbinen M et al., "Oxazolidinone resistance genes in florfenicol-resistant enterococci from beef cattle and veal calves at slaughter", Frontiers in Microbiology, 2023;14
Submission	Registration date: 24-Nov-2021 University of Zurich
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	98
WGS master	4
Genomic DNA	94
SRA Experiments	34
Protein Sequences	77107
Other datasets
BioSample	34
Assembly	34

Assembly details:

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Assembly level

Number of Assemblies

29
1
4
34

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_028335405.1		2	SAMN23424505	K79-1	Aerococcus urinaeequi
GCA_028335385.1		3	SAMN23424506	K68-8	Companilactobacillus farciminis
GCA_028335365.1		4	SAMN23424507	K205-4b	Enterococcus dispar
GCA_028335325.1		2	SAMN23424508	R59-1	Enterococcus durans
GCA_028335645.1		2	SAMN23424509	R109-1	Enterococcus durans
GCA_028200685.1	JAQKPR000000000		SAMN23424522	K85-2	Enterococcus faecalis
GCA_028200665.1	JAQKPQ000000000		SAMN23424521	K82-1a	Enterococcus faecalis
GCA_028200655.1	JAQKPS000000000		SAMN23424523	K195-1	Enterococcus faecalis
GCA_028200755.1	JAQKPT000000000		SAMN23424520	K189-7	Enterococcus faecalis
GCA_028335545.1		3	SAMN23424515	K72-1	Enterococcus faecalis
GCA_028335505.1		2	SAMN23424517	K194-1	Enterococcus faecalis
GCA_028335725.1		3	SAMN23424513	K191-1	Enterococcus faecalis
GCA_028335705.1		4	SAMN23424510	K205-3	Enterococcus faecalis
GCA_028335685.1		2	SAMN23424514	K188-1	Enterococcus faecalis
GCA_028335665.1		2	SAMN23424519	K80-2b	Enterococcus faecalis
GCA_028335305.1		2	SAMN23424512	K198-1	Enterococcus faecalis
GCA_028335445.1		2	SAMN23424516	K137-1a	Enterococcus faecalis
GCA_028335425.1		2	SAMN23424518	K70-12a	Enterococcus faecalis
GCA_028335345.1		4	SAMN23424511	K190-1	Enterococcus faecalis
GCA_028551565.1		2	SAMN23424530	K192-1	Enterococcus faecium
GCA_028335265.1		3	SAMN23424533	R186-2	Enterococcus faecium
GCA_028335245.1		3	SAMN23424534	R39-1	Enterococcus faecium
GCA_028335225.1		4	SAMN23424529	K191-3	Enterococcus faecium
GCA_028335205.1		3	SAMN23424535	K195-6b	Enterococcus faecium
GCA_028335485.1		4	SAMN23424531	K188-5	Enterococcus faecium
GCA_028335465.1		5	SAMN23424532	K69-1a	Enterococcus faecium
GCA_028335525.1		4	SAMN23424528	K162-1	Enterococcus faecium
GCA_028335625.1		4	SAMN23424524	K80-15b	Enterococcus faecium
GCA_028335605.1		3	SAMN23424525	K189-3	Enterococcus faecium
GCA_028335585.1		3	SAMN23424526	K70-1a	Enterococcus faecium
GCA_028335565.1		3	SAMN23424527	K75-1	Enterococcus faecium
GCA_028335185.1		4	SAMN23424536	K205-4a	Enterococcus gallinarum
GCA_028335165.1		4	SAMN23424538	K136-2	Vagococcus lutrae
GCA_028335285.1		3	SAMN23424537	K204-1	Vagococcus lutrae

SRA Data Details

Parameter	Value
Data volume, Gbases	11
Data volume, Mbytes	4015

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Lactic acid bacteria

WGS: Florfenicol-resistant lactic acid bacteria from cattle at slaughter

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