subsurface metagenome (ID 786116) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJDB12054 ID: 786116

subsurface metagenome

Metagenome analysis of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan

Microbial populations in subseafloor sediments rely primarily on buried organic matter derived from photosynthetic surface environments. More...

Accession	PRJDB12054
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	subsurface metagenome[Taxonomy ID: 1564682] unclassified sequences; metagenomes; ecological metagenomes; subsurface metagenome
Publications	Medvedeva S et al., "Three families of Asgard archaeal viruses identified in metagenome-assembled genomes.", Nat Microbiol, 2022 Jul;7(7):962-973
Submission	Registration date: 3-Dec-2021 Super-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	13749
WGS master	20
Genomic DNA	10
SRA Experiments	12
Protein Sequences	458
Publications
PubMed	1
PMC	1
Other datasets
BioSample	37
Assembly	25

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

20
20

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_023705985.1	BPTO00000000	SAMD00399035	8H_bin2	Candidatus Heimdallarchaeota archaeon
GCA_023705965.1	BPTN00000000	SAMD00399034	8H_bin10	Candidatus Heimdallarchaeota archaeon
GCA_023705945.1	BPTM00000000	SAMD00399033	7H_bin003	Candidatus Heimdallarchaeota archaeon
GCA_023705925.1	BPTL00000000	SAMD00399032	7H_bin7	Candidatus Heimdallarchaeota archaeon
GCA_023705905.1	BPTK00000000	SAMD00399031	7H_bin4	Candidatus Heimdallarchaeota archaeon
GCA_023705765.1	BPTD00000000	SAMD00399024	3H_bin9	Candidatus Heimdallarchaeota archaeon
GCA_023705885.1	BPTJ00000000	SAMD00399030	7H_bin3	Candidatus Thorarchaeota archaeon
GCA_023705825.1	BPTG00000000	SAMD00399027	7H_bin013	Candidatus Thorarchaeota archaeon
GCA_023705865.1	BPTI00000000	SAMD00399029	7H_bin2	Promethearchaeota archaeon
GCA_023705845.1	BPTH00000000	SAMD00399028	7H_bin10	Promethearchaeota archaeon
GCA_023705745.1	BPTC00000000	SAMD00399023	3H_bin27	Promethearchaeota archaeon
GCA_023705725.1	BPTB00000000	SAMD00399022	3H_bin20	Promethearchaeota archaeon
GCA_023705705.1	BPTA00000000	SAMD00399021	3H_bin001	Promethearchaeota archaeon
GCA_023705685.1	BPSZ00000000	SAMD00399020	2H_bin2	Promethearchaeota archaeon
GCA_023705665.1	BPSY00000000	SAMD00399019	28H_bin001	Promethearchaeota archaeon
GCA_023705645.1	BPSX00000000	SAMD00399018	17H_bin22	Promethearchaeota archaeon
GCA_023705625.1	BPSW00000000	SAMD00399017	10H_bin001	Promethearchaeota archaeon
GCA_023706005.1	BPTP00000000	SAMD00399036	8H_bin7	Promethearchaeota archaeon
GCA_023705805.1	BPTF00000000	SAMD00399026	4H_bin40	Promethearchaeota archaeon
GCA_023705785.1	BPTE00000000	SAMD00399025	4H_bin021	Promethearchaeota archaeon

SRA Data Details

Parameter	Value
Data volume, Gbases	30
Data volume, Mbytes	15438

BioProject

Result Filters

Display Settings:

Send to:

subsurface metagenome

Metagenome analysis of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan

Supplemental Content

Related information

Recent activity