Human gut metagenome (ID 798244) - BioProject

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Accession: PRJNA798244 ID: 798244

Human gut metagenome

HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and Uncultured Human Gut Microbiota

PacBio HiFi sequencing read data on a fecal sample of a healthy Korean omnivore volunteer with Seqeul II platform.

Accession	PRJNA798244
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Publications	Kim CY et al., "HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota.", Nat Commun, 2022 Oct 26;13(1):6367
Submission	Registration date: 19-Oct-2022 Yonsei University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	102
WGS master	73
Genomic DNA	29
SRA Experiments	1
Protein Sequences	91195
Publications
PubMed	1
PMC	1
Other datasets
BioSample	103
Assembly	102

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

29
73
102

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_025993295.1	DAJPFF000000000		SAMN31100369	VEG01_HIC_0063	Adlercreutzia equolifaciens
GCA_025993435.1	DAJPFC000000000		SAMN31100363	OMN02_HAM_0033	Akkermansia muciniphila
GCA_025993285.1	DAJPFH000000000		SAMN31100372	VEG01_HAM_0048	Akkermansia muciniphila
GCA_025993455.1	DAJPEZ000000000		SAMN31100357	VEG02_HAM_0088	Akkermansiaceae bacterium
GCA_025757545.1		1	SAMN31100351	KR001_HAM_0061	Alistipes onderdonkii
GCA_025993525.1	DAJPEW000000000		SAMN31100352	OMN01_HAM_0111	Anaerobutyricum hallii
GCA_025757705.1		1	SAMN31100367	KR001_HIC_0005	Anaerostipes hadrus
GCA_025992315.1	DAJPHG000000000		SAMN31100429	VEG01_HIC_0010	Bacilli bacterium
GCA_025992255.1	DAJPHE000000000		SAMN31100427	OMN01_HAM_0078	Bacilli bacterium
GCA_025992235.1	DAJPHH000000000		SAMN31100430	VEG02_MFL_0321	Bacilli bacterium
GCA_025993635.1	DAJPEQ000000000		SAMN31100340	OMN01_HAM_0047	Bacteroidaceae bacterium
GCA_025993685.1	DAJPEN000000000		SAMN31100336	OMN01_HAM_0033	Bacteroides mediterraneensis
GCA_025757905.1		1	SAMN31100330	KR001_HIC_0032	Bacteroides ovatus
GCA_025757525.1		1	SAMN31100329	KR001_HAM_0001	Bacteroides ovatus
GCA_025757925.1		1	SAMN31100331	KR001_HAM_0006	Bacteroides thetaiotaomicron
GCA_025757585.1		1	SAMN31100332	KR001_HAM_0012	Bacteroides xylanisolvens
GCA_025757825.1		1	SAMN31100400	KR001_MFL_0031	Bifidobacteriaceae bacterium
GCA_025992955.1	DAJPFX000000000		SAMN31100391	OMN01_HAM_0097	Bifidobacteriaceae bacterium
GCA_025993055.1	DAJPFS000000000		SAMN31100384	OMN01_HAM_0101	Bifidobacteriaceae bacterium
GCA_025992555.1	DAJPGR000000000		SAMN31100414	OMN01_MFL_0491	Bifidobacteriaceae bacterium
GCA_025992815.1	DAJPGG000000000		SAMN31100402	VEG02_MFL_0149	Bifidobacteriaceae bacterium
GCA_025992735.1	DAJPGK000000000		SAMN31100406	VEG02_HAM_0083	Bifidobacterium adolescentis
GCA_025992935.1	DAJPFZ000000000		SAMN31100393	VEG02_HAM_0111	Bifidobacterium adolescentis
GCA_025992485.1	DAJPGW000000000		SAMN31100419	VEG02_HAM_0080	Clostridiaceae bacterium
GCA_025992455.1	DAJPGX000000000		SAMN31100424	OMN01_HAM_0046	Clostridiaceae bacterium
GCA_025992435.1	DAJPGU000000000		SAMN31100417	OMN02_MFL_0087	Clostridiaceae bacterium
GCA_025992415.1	DAJPHB000000000		SAMN31100421	VEG02_HAM_0109	Clostridiaceae bacterium
GCA_025992365.1	DAJPGZ000000000		SAMN31100428	VEG01_MFL_0378	Clostridiaceae bacterium
GCA_025992345.1	DAJPHC000000000		SAMN31100426	VEG01_HAM_0010	Clostridiaceae bacterium
GCA_025992355.1	DAJPGY000000000		SAMN31100425	VEG01_HAM_0022	Clostridiaceae bacterium
GCA_025992245.1	DAJPHD000000000		SAMN31100422	VEG01_HIC_0076	Clostridiaceae bacterium
GCA_025992265.1	DAJPHF000000000		SAMN31100420	VEG02_HIC_0086	Clostridiaceae bacterium
GCA_025757965.1		1	SAMN31100354	KR001_HAM_0047	Clostridiaceae bacterium
GCA_025757645.1		1	SAMN31100388	KR001_HIC_0007	Clostridiales bacterium
GCA_025992655.1	DAJPGL000000000		SAMN31100407	OMN01_HAM_0050	Clostridiales bacterium
GCA_025992765.1	DAJPGH000000000		SAMN31100403	OMN02_HAM_0021	Clostridiales bacterium
GCA_025993615.1	DAJPEO000000000		SAMN31100337	VEG02_HIC_0074	Clostridiales bacterium
GCA_025993545.1	DAJPET000000000		SAMN31100344	VEG02_HAM_0090	Clostridiales bacterium
GCA_025993505.1	DAJPEU000000000		SAMN31100347	VEG02_HAM_0012	Clostridiales bacterium
GCA_025993475.1	DAJPEX000000000		SAMN31100355	OMN02_HIC_0071	Clostridiales bacterium
GCA_025993075.1	DAJPFR000000000		SAMN31100383	OMN02_HAM_0034	Collinsella aerofaciens
GCA_025992535.1	DAJPGS000000000		SAMN31100415	OMN01_MFL_0267	Collinsella intestinalis
GCA_025757785.1		1	SAMN31100374	KR001_HAM_0048	Coprobacillaceae bacterium
GCA_025993335.1	DAJPFG000000000		SAMN31100371	VEG01_HIC_0072	Coprobacillaceae bacterium
GCA_025993255.1	DAJPFL000000000		SAMN31100377	OMN01_HAM_0039	Coprobacillaceae bacterium
GCA_025993025.1	DAJPFT000000000		SAMN31100385	VEG01_HAM_0083	Coriobacteriaceae bacterium
GCA_025993015.1	DAJPFV000000000		SAMN31100387	OMN01_HAM_0001	Coriobacteriaceae bacterium
GCA_025992995.1	DAJPFW000000000		SAMN31100389	VEG02_HAM_0051	Coriobacteriaceae bacterium
GCA_025992855.1	DAJPGB000000000		SAMN31100395	OMN01_HAM_0037	Coriobacteriaceae bacterium
GCA_025992755.1	DAJPGF000000000		SAMN31100401	VEG01_HAM_0027	Coriobacteriaceae bacterium
GCA_025992705.1	DAJPGJ000000000		SAMN31100405	VEG01_HAM_0045	Coriobacteriaceae bacterium
GCA_025757745.1		1	SAMN31100390	KR001_HIC_0047	Coriobacteriaceae bacterium
GCA_025992585.1	DAJPGP000000000		SAMN31100411	OMN02_HAM_0049	Eggerthellaceae bacterium
GCA_025993575.1	DAJPES000000000		SAMN31100343	VEG01_HAM_0001	Eggerthellaceae bacterium
GCA_025757665.1		1	SAMN31100334	KR001_HIC_0034	Escherichia coli
GCA_025993495.1	DAJPEV000000000		SAMN31100348	OMN02_HAM_0050	Faecalibacterium prausnitzii
GCA_025993415.1	DAJPFA000000000		SAMN31100359	OMN01_HIC_0060	Faecalibacterium prausnitzii
GCA_025993375.1	DAJPFB000000000		SAMN31100362	OMN01_HIC_0059	Faecalibacterium prausnitzii
GCA_025757765.1		1	SAMN31100368	KR001_HIC_0004	Faecalibacterium prausnitzii
GCA_025758085.1		1	SAMN31100335	KR001_HAM_0036	Flavonifractor plautii
GCA_025993655.1	DAJPEP000000000		SAMN31100339	VEG01_HIC_0053	Fusicatenibacter saccharivorans
GCA_025757605.1		1	SAMN31100349	KR001_HAM_0062	Fusobacterium varium
GCA_025993215.1	DAJPFM000000000		SAMN31100378	VEG02_HAM_0029	Lachnospiraceae bacterium
GCA_025758065.1		1	SAMN31100338	KR001_HIC_0035	Lachnospiraceae bacterium
GCA_025758025.1		1	SAMN31100350	KR001_MFL_0129	Lachnospiraceae bacterium
GCA_025757865.1		1	SAMN31100341	KR001_HAM_0003	Lachnospiraceae bacterium
GCA_025992465.1	DAJPGV000000000		SAMN31100418	VEG01_HAM_0019	Methanobrevibacter smithii
GCA_025992335.1	DAJPHA000000000		SAMN31100423	VEG01_HIC_0070	Methanobrevibacter smithii
GCA_025757565.1		1	SAMN31100360	KR001_HIC_0038	Oscillospiraceae bacterium
GCA_025757625.1		1	SAMN31100345	KR001_HAM_0045	Oscillospiraceae bacterium
GCA_025757685.1		1	SAMN31100412	KR001_HAM_0053	Oscillospiraceae bacterium
GCA_025757845.1		1	SAMN31100365	KR001_HAM_0066	Oscillospiraceae bacterium
GCA_025757805.1		1	SAMN31100370	KR001_HIC_0044	Oscillospiraceae bacterium
GCA_025758005.1		1	SAMN31100346	KR001_HAM_0051	Oscillospiraceae bacterium
GCA_025757985.1		1	SAMN31100361	KR001_HAM_0071	Oscillospiraceae bacterium
GCA_025757945.1		1	SAMN31100353	KR001_HAM_0005	Oscillospiraceae bacterium
GCA_025758045.1		1	SAMN31100358	KR001_HIC_0042	Oscillospiraceae bacterium
GCA_025993275.1	DAJPFE000000000		SAMN31100366	VEG02_HAM_0105	Oscillospiraceae bacterium
GCA_025993345.1	DAJPFD000000000		SAMN31100364	VEG02_HAM_0021	Oscillospiraceae bacterium
GCA_025993395.1	DAJPEY000000000		SAMN31100356	VEG01_HIC_0058	Oscillospiraceae bacterium
GCA_025993095.1	DAJPFP000000000		SAMN31100381	VEG01_HAM_0042	Oscillospiraceae bacterium
GCA_025993155.1	DAJPFO000000000		SAMN31100380	OMN02_MFL_0075	Oscillospiraceae bacterium
GCA_025993135.1	DAJPFN000000000		SAMN31100379	OMN01_HAM_0062	Oscillospiraceae bacterium
GCA_025992685.1	DAJPGI000000000		SAMN31100404	OMN02_HAM_0017	Oscillospiraceae bacterium
GCA_025992795.1	DAJPGE000000000		SAMN31100399	VEG01_HAM_0041	Oscillospiraceae bacterium
GCA_025992575.1	DAJPGN000000000		SAMN31100409	OMN02_HAM_0039	Oscillospiraceae bacterium
GCA_025992605.1	DAJPGO000000000		SAMN31100410	OMN01_HIC_0064	Oscillospiraceae bacterium
GCA_025992615.1	DAJPGQ000000000		SAMN31100413	OMN01_HAM_0053	Oscillospiraceae bacterium
GCA_025757725.1		1	SAMN31100333	KR001_HAM_0055	Parabacteroides distasonis
GCA_025993225.1	DAJPFI000000000		SAMN31100373	OMN01_HAM_0130	Phascolarctobacterium faecium
GCA_025993595.1	DAJPER000000000		SAMN31100342	OMN02_HAM_0070	Prevotellaceae bacterium
GCA_025993195.1	DAJPFJ000000000		SAMN31100375	VEG02_HIC_0073	Rikenellaceae bacterium
GCA_025992835.1	DAJPGD000000000		SAMN31100398	VEG02_HAM_0055	Ruminococcus bromii
GCA_025992875.1	DAJPFY000000000		SAMN31100392	VEG02_HIC_0084	Ruminococcus bromii
GCA_025992865.1	DAJPGC000000000		SAMN31100396	VEG01_HAM_0002	Ruminococcus bromii
GCA_025992675.1	DAJPGM000000000		SAMN31100408	VEG01_HAM_0025	Ruminococcus bromii
GCA_025993085.1	DAJPFQ000000000		SAMN31100382	VEG01_HAM_0009	Succinivibrionaceae bacterium
GCA_025992475.1	DAJPGT000000000		SAMN31100416	OMN02_HAM_0069	Sutterellaceae bacterium
GCA_025992975.1	DAJPFU000000000		SAMN31100386	VEG02_HAM_0068	Veillonellaceae bacterium
GCA_025992895.1	DAJPGA000000000		SAMN31100394	OMN01_MFL_0295	Veillonellaceae bacterium
GCA_025993175.1	DAJPFK000000000		SAMN31100376	OMN02_HAM_0118	Veillonellaceae bacterium
GCA_025757885.1		1	SAMN31100397	KR001_HIC_0043	Veillonellaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	30
Data volume, Mbytes	19224

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Human gut metagenome

HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and Uncultured Human Gut Microbiota

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