ID 798893 - BioProject

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Accession: PRJNA798893 ID: 798893

Genomic diversity of Campylobacter larii group isolates from Europe.

Campylobacter lari (C. lari) group is a sporadic causative agent of human gastroenteritis and is frequently found in shellfish, marine waters, shorebirds, and marine mammals. More...

Accession	PRJNA798893
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"COllaborative Management Platform for detection and Analyses of (Re-) emerging and foodborne outbreaks in Europe" (Grant ID COMPARE, European Union)
Submission	Registration date: 20-Jan-2022 - IFREMER - ANSES - CNRCH - IFREMER - Statens Serum Institut - Robert Koch Institute - Freie Universität Berlin - Federal Institute for Risk Assessment
Relevance	Human, domestic animals, wild birds, food and envrionment.

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	148
SRA Experiments	148
Other datasets
BioSample	148
Assembly	148

Assembly details:

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Assembly level

Number of Assemblies

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Contig

Total

1
147
148

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_025773425.1	JAKMTY000000000	SAMN25132855	ANSES_CTA782	Campylobacter lari
GCA_025773405.1	JAKMTW000000000	SAMN25132857	ANSES_CTA846	Campylobacter lari
GCA_025773385.1	JAKMTX000000000	SAMN25132856	ANSES_CTA808	Campylobacter lari
GCA_025773335.1	JAKMTT000000000	SAMN25132860	CNRCH_2003_1402	Campylobacter lari
GCA_025773345.1	JAKMTV000000000	SAMN25132858	BfR_CA19_01126	Campylobacter lari
GCA_025773325.1	JAKMTU000000000	SAMN25132859	BfR_CA19_01129	Campylobacter lari
GCA_025773305.1	JAKMTS000000000	SAMN25132861	CNRCH_2004_0020	Campylobacter lari
GCA_025773285.1	JAKMTR000000000	SAMN25132862	CNRCH_2004_0233	Campylobacter lari
GCA_025773255.1	JAKNSN000000000	SAMN25132863	CNRCH_2005_0711	Campylobacter lari
GCA_025773745.1	JAKMUN000000000	SAMN25132840	ANSES_CTA_062	Campylobacter lari
GCA_025773725.1	JAKMUO000000000	SAMN25132839	ANSES_C16Bov1061	Campylobacter lari
GCA_025773705.1	JAKMUL000000000	SAMN25132842	ANSES_CTA_364	Campylobacter lari
GCA_025773685.1	JAKMUM000000000	SAMN25132841	ANSES_CTA_341	Campylobacter lari
GCA_025773665.1	JAKMUK000000000	SAMN25132843	ANSES_CTA_367	Campylobacter lari
GCA_025773635.1	JAKMUI000000000	SAMN25132845	ANSES_CTA_408	Campylobacter lari
GCA_025773625.1	JAKMUJ000000000	SAMN25132844	ANSES_CTA_380	Campylobacter lari
GCA_025773605.1	JAKMUH000000000	SAMN25132846	ANSES_CTA_443	Campylobacter lari
GCA_025773585.1	JAKMUG000000000	SAMN25132847	ANSES_CTA_584	Campylobacter lari
GCA_025773555.1	JAKMUE000000000	SAMN25132849	ANSES_CTA_645	Campylobacter lari
GCA_025773545.1	JAKMUF000000000	SAMN25132848	ANSES_CTA_633	Campylobacter lari
GCA_025773525.1	JAKMUD000000000	SAMN25132850	ANSES_CTA_650	Campylobacter lari
GCA_025773495.1	JAKMUC000000000	SAMN25132851	ANSES_CTA_682	Campylobacter lari
GCA_025773475.1	JAKMUA000000000	SAMN25132853	ANSES_CTA611	Campylobacter lari
GCA_025773465.1	JAKMUB000000000	SAMN25132852	ANSES_CTA_696	Campylobacter lari
GCA_025773435.1	JAKMTZ000000000	SAMN25132854	ANSES_CTA741	Campylobacter lari
GCA_025772325.1	JAKMRP000000000	SAMN25132917	IFREMER_LSEM_CL1284	Campylobacter lari
GCA_025772315.1	JAKMSA000000000	SAMN25132906	FU_513	Campylobacter lari
GCA_025772285.1	JAKMRY000000000	SAMN25132908	IFREMER_LSEM_CL_479	Campylobacter lari
GCA_025772255.1	JAKMRW000000000	SAMN25132910	IFREMER_LSEM_CL1055	Campylobacter lari
GCA_025772205.1	JAKMRV000000000	SAMN25132911	IFREMER_LSEM_CL1056	Campylobacter lari
GCA_025772185.1	JAKMRR000000000	SAMN25132915	IFREMER_LSEM_CL1175	Campylobacter lari
GCA_025772165.1	JAKMRS000000000	SAMN25132914	IFREMER_LSEM_CL1161	Campylobacter lari
GCA_025772135.1	JAKMRO000000000	SAMN25132918	IFREMER_LSEM_CL1287	Campylobacter lari
GCA_025772125.1	JAKMRQ000000000	SAMN25132916	IFREMER_LSEM_CL1279	Campylobacter lari
GCA_025772085.1	JAKMRN000000000	SAMN25132919	IFREMER_LSEM_CL1293	Campylobacter lari
GCA_025772065.1	JAKMRL000000000	SAMN25132921	IFREMER_LSEM_CL1866	Campylobacter lari
GCA_025772655.1	JAKMSM000000000	SAMN25132894	CNRCH_2015_2189	Campylobacter lari
GCA_025772645.1	JAKMSN000000000	SAMN25132893	CNRCH_2015_2161	Campylobacter lari
GCA_025772625.1	JAKMSL000000000	SAMN25132895	CNRCH_2015_2426	Campylobacter lari
GCA_025772585.1	JAKMSJ000000000	SAMN25132897	CNRCH_2016_0217h	Campylobacter lari
GCA_025772565.1	JAKMSG000000000	SAMN25132900	CNRCH_2016_1121h	Campylobacter lari
GCA_025772545.1	JAKMSH000000000	SAMN25132899	CNRCH_2016_0920h	Campylobacter lari
GCA_025772525.1	JAKMSI000000000	SAMN25132898	CNRCH_2016_0235	Campylobacter lari
GCA_025772485.1	JAKMSE000000000	SAMN25132902	FU_1740	Campylobacter lari
GCA_025772445.1	JAKMRX000000000	SAMN25132909	IFREMER_LSEM_CL105	Campylobacter lari
GCA_025772435.1	JAKMSB000000000	SAMN25132905	FU_502	Campylobacter lari
GCA_025773005.1	JAKMTF000000000	SAMN25132875	CNRCH_2013_0804	Campylobacter lari
GCA_025772405.1	JAKMSD000000000	SAMN25132903	FU_495	Campylobacter lari
GCA_025773225.1	JAKMTP000000000	SAMN25132865	CNRCH_2009_0014	Campylobacter lari
GCA_025773195.1	JAKMTM000000000	SAMN25132868	CNRCH_2009_2277	Campylobacter lari
GCA_025773185.1	JAKMTN000000000	SAMN25132867	CNRCH_2009_1982	Campylobacter lari
GCA_025773165.1	JAKMTL000000000	SAMN25132869	CNRCH_2010_0566h	Campylobacter lari
GCA_025773145.1	JAKMTO000000000	SAMN25132866	CNRCH_2009_0045	Campylobacter lari
GCA_025773125.1	JAKMTK000000000	SAMN25132870	CNRCH_2010_2003	Campylobacter lari
GCA_025773105.1	JAKMTH000000000	SAMN25132873	CNRCH_2013_0637	Campylobacter lari
GCA_025773075.1	JAKMTI000000000	SAMN25132872	CNRCH_2012_3021	Campylobacter lari
GCA_025773785.1	JAKMUQ000000000	SAMN25132837	ANSES_C16Bov1021	Campylobacter lari
GCA_025773765.1	JAKMUP000000000	SAMN25132838	ANSES_C16Bov1060	Campylobacter lari
GCA_025773045.1	JAKMTJ000000000	SAMN25132871	CNRCH_2011_2957	Campylobacter lari
GCA_025772945.1	JAKMTC000000000	SAMN25132878	CNRCH_2014_0093	Campylobacter lari
GCA_025772915.1	JAKMTA000000000	SAMN25132880	CNRCH_2014_0458	Campylobacter lari
GCA_025772905.1	JAKMSZ000000000	SAMN25132881	CNRCH_2014_1019	Campylobacter lari
GCA_025772885.1	JAKMSY000000000	SAMN25132882	CNRCH_2014_1071h	Campylobacter lari
GCA_025772825.1	JAKMSV000000000	SAMN25132885	CNRCH_2014_2875	Campylobacter lari
GCA_025772805.1	JAKMSU000000000	SAMN25132886	CNRCH_2015_0069	Campylobacter lari
GCA_025772745.1	JAKMSS000000000	SAMN25132888	CNRCH_2015_0658	Campylobacter lari
GCA_025772725.1	JAKMSP000000000	SAMN25132891	CNRCH_2015_1582	Campylobacter lari
GCA_025772705.1	JAKMSQ000000000	SAMN25132890	CNRCH_2015_1131h	Campylobacter lari
GCA_025771375.1	JAKMQE000000000	SAMN25132954	RKI_CA19_01117	Campylobacter lari
GCA_025771365.1	JAKMQB000000000	SAMN25132957	RKI_CA19_01120	Campylobacter lari
GCA_025771345.1	JAKMQC000000000	SAMN25132956	RKI_CA19_01119	Campylobacter lari
GCA_025771255.1	JAKMPX000000000	SAMN25132961	RKI_CA19_01124	Campylobacter lari
GCA_025771245.1	JAKMPW000000000	SAMN25132962	RKI_CA19_01125	Campylobacter lari
GCA_025771145.1	JAKMPS000000000	SAMN25132966	RKI_CA19_01367	Campylobacter lari
GCA_025771125.1	JAKMPQ000000000	SAMN25132968	RKI_CA19_01369	Campylobacter lari
GCA_025771105.1	JAKMPP000000000	SAMN25132969	SSI_0701H50567	Campylobacter lari
GCA_025771065.1	JAKMPN000000000	SAMN25132971	SSI_1006R12924	Campylobacter lari
GCA_025771075.1	JAKMPO000000000	SAMN25132970	SSI_1004R12719	Campylobacter lari
GCA_025771045.1	JAKMPM000000000	SAMN25132972	SSI_1408H50366	Campylobacter lari
GCA_025771025.1	JAKMPL000000000	SAMN25132973	SSI_1504W38511	Campylobacter lari
GCA_025770995.1	JAKMPG000000000	SAMN25132978	SSI_1606S33752	Campylobacter lari
GCA_025770985.1	JAKMPK000000000	SAMN25132974	SSI_1505M38347	Campylobacter lari
GCA_025770965.1	JAKMPI000000000	SAMN25132976	SSI_1509W52851	Campylobacter lari
GCA_025770945.1	JAKMPJ000000000	SAMN25132975	SSI_1506M41141	Campylobacter lari
GCA_025770925.1	JAKMPH000000000	SAMN25132977	SSI_1510T46153	Campylobacter lari
GCA_025770905.1	JAKMPF000000000	SAMN25132979	SSI_17013866	Campylobacter lari
GCA_025770845.1	JAKMPA000000000	SAMN25132984	SSI_1907F11674	Campylobacter lari
GCA_025770855.1	JAKMPB000000000	SAMN25132983	SSI_1906M40701	Campylobacter lari
GCA_025770835.1	JAKMPD000000000	SAMN25132981	SSI_1706M51548	Campylobacter lari
GCA_025770825.1	JAKMPC000000000	SAMN25132982	SSI_1804M1066	Campylobacter lari
GCA_025770805.1	JAKMPE000000000	SAMN25132980	SSI_1706H46180	Campylobacter lari
GCA_025771995.1	JAKMRH000000000	SAMN25132925	IFREMER_LSEM_CL1937	Campylobacter lari
GCA_025771985.1	JAKMRI000000000	SAMN25132924	IFREMER_LSEM_CL1928	Campylobacter lari
GCA_025771965.1	JAKMRG000000000	SAMN25132926	IFREMER_LSEM_CL1946	Campylobacter lari
GCA_025771945.1	JAKMRF000000000	SAMN25132927	IFREMER_LSEM_CL1958	Campylobacter lari
GCA_025771925.1	JAKMRD000000000	SAMN25132929	IFREMER_LSEM_CL1966	Campylobacter lari
GCA_025771895.1	JAKMRC000000000	SAMN25132930	IFREMER_LSEM_CL1974	Campylobacter lari
GCA_025771885.1	JAKMRE000000000	SAMN25132928	IFREMER_LSEM_CL1962	Campylobacter lari
GCA_025771805.1	JAKMQY000000000	SAMN25132934	IFREMER_LSEM_CL2110	Campylobacter lari
GCA_025771785.1	JAKMQX000000000	SAMN25132935	IFREMER_LSEM_CL2114	Campylobacter lari
GCA_025771765.1	JAKMQW000000000	SAMN25132936	IFREMER_LSEM_CL2118	Campylobacter lari
GCA_025771845.1	JAKMRB000000000	SAMN25132931	IFREMER_LSEM_CL2086	Campylobacter lari
GCA_025771695.1	JAKMQU000000000	SAMN25132938	IFREMER_LSEM_CL2135	Campylobacter lari
GCA_025771665.1	JAKMQR000000000	SAMN25132941	IFREMER_LSEM_CL2243	Campylobacter lari
GCA_025771605.1	JAKMQN000000000	SAMN25132945	IFREMER_LSEM_CL474	Campylobacter lari
GCA_025771585.1	JAKMQO000000000	SAMN25132944	IFREMER_LSEM_CL349	Campylobacter lari
GCA_025771565.1	JAKMQM000000000	SAMN25132946	IFREMER_LSEM_CL535	Campylobacter lari
GCA_025771505.1	JAKMQH000000000	SAMN25132951	RKI_CA19_01114	Campylobacter lari
GCA_025771495.1	JAKMQL000000000	SAMN25132947	IFREMER_LSEM_CL898	Campylobacter lari
GCA_025771485.1	JAKMQJ000000000	SAMN25132949	RKI_CA19_01112	Campylobacter lari
GCA_025771465.1	JAKMQI000000000	SAMN25132950	RKI_CA19_01113	Campylobacter lari
GCA_025771415.1	JAKMQG000000000	SAMN25132952	RKI_CA19_01115	Campylobacter lari
GCA_025771425.1	JAKMQD000000000	SAMN25132955	RKI_CA19_01118	Campylobacter lari
GCA_025771185.1	JAKMPT000000000	SAMN25132965	RKI_CA19_01130	Campylobacter lari
GCA_025771165.1	JAKMPR000000000	SAMN25132967	RKI_CA19_01368	Campylobacter lari
GCA_025771285.1	JAKMPY000000000	SAMN25132960	RKI_CA19_01123	Campylobacter lari
GCA_025773245.1	JAKMTQ000000000	SAMN25132864	CNRCH_2007_0968H	Campylobacter sp. CNRCH_2007_0968H
GCA_025773055.1	JAKMTG000000000	SAMN25132874	CNRCH_2013_0671h	Campylobacter sp. CNRCH_2013_0671h
GCA_025773025.1	JAKMTE000000000	SAMN25132876	CNRCH_2013_0855	Campylobacter sp. CNRCH_2013_0855
GCA_025772965.1	JAKMTD000000000	SAMN25132877	CNRCH_2013_0898h	Campylobacter sp. CNRCH_2013_0898h
GCA_025772985.1	JAKMTB000000000	SAMN25132879	CNRCH_2014_0184h	Campylobacter sp. CNRCH_2014_0184h
GCA_025772865.1	JAKMSX000000000	SAMN25132883	CNRCH_2014_2452	Campylobacter sp. CNRCH_2014_2452
GCA_025772845.1	JAKMSW000000000	SAMN25132884	CNRCH_2014_2849	Campylobacter sp. CNRCH_2014_2849
GCA_025772785.1	JAKMST000000000	SAMN25132887	CNRCH_2015_0338h	Campylobacter sp. CNRCH_2015_0338h
GCA_025772765.1	JAKMSR000000000	SAMN25132889	CNRCH_2015_0814	Campylobacter sp. CNRCH_2015_0814
GCA_025772685.1	JAKMSO000000000	SAMN25132892	CNRCH_2015_1657	Campylobacter sp. CNRCH_2015_1657
GCA_025772605.1	JAKMSK000000000	SAMN25132896	CNRCH_2016_0050h	Campylobacter sp. CNRCH_2016_0050h
GCA_025772505.1	JAKMSF000000000	SAMN25132901	CNRCH_2016_3089	Campylobacter sp. CNRCH_2016_3089
GCA_025772425.1	JAKMSC000000000	SAMN25132904	FU_497	Campylobacter sp. FU_497
GCA_025772385.1	JAKMRZ000000000	SAMN25132907	FU_520	Campylobacter sp. FU_520
GCA_025772235.1	JAKMRU000000000	SAMN25132912	IFREMER_LSEM_CL1085	Campylobacter sp. IFREMER_LSEM_CL1085
GCA_025772225.1	JAKMRT000000000	SAMN25132913	IFREMER_LSEM_CL1097	Campylobacter sp. IFREMER_LSEM_CL1097
GCA_025772105.1	JAKMRM000000000	SAMN25132920	IFREMER_LSEM_CL1846	Campylobacter sp. IFREMER_LSEM_CL1846
GCA_025772045.1	JAKMRK000000000	SAMN25132922	IFREMER_LSEM_CL1890	Campylobacter sp. IFREMER_LSEM_CL1890
GCA_025772025.1	JAKMRJ000000000	SAMN25132923	IFREMER_LSEM_CL1904	Campylobacter sp. IFREMER_LSEM_CL1904
GCA_025771865.1	JAKMRA000000000	SAMN25132932	IFREMER_LSEM_CL2090	Campylobacter sp. IFREMER_LSEM_CL2090
GCA_025771825.1	JAKMQZ000000000	SAMN25132933	IFREMER_LSEM_CL2101	Campylobacter sp. IFREMER_LSEM_CL2101
GCA_025771745.1	JAKMQV000000000	SAMN25132937	IFREMER_LSEM_CL2127	Campylobacter sp. IFREMER_LSEM_CL2127
GCA_025771725.1	JAKMQT000000000	SAMN25132939	IFREMER_LSEM_CL2151	Campylobacter sp. IFREMER_LSEM_CL2151
GCA_025771685.1	JAKMQS000000000	SAMN25132940	IFREMER_LSEM_CL2194	Campylobacter sp. IFREMER_LSEM_CL2194
GCA_025771645.1	JAKMQQ000000000	SAMN25132942	IFREMER_LSEM_CL2256	Campylobacter sp. IFREMER_LSEM_CL2256
GCA_025771615.1	JAKMQP000000000	SAMN25132943	IFREMER_LSEM_CL292	Campylobacter sp. IFREMER_LSEM_CL292
GCA_025771545.1	JAKMQK000000000	SAMN25132948	IFREMER_LSEM_CL908	Campylobacter sp. IFREMER_LSEM_CL908
GCA_025771405.1	JAKMQF000000000	SAMN25132953	RKI_CA19_01116	Campylobacter sp. RKI_CA19_01116
GCA_025771295.1	JAKMQA000000000	SAMN25132958	RKI_CA19_01121	Campylobacter sp. RKI_CA19_01121
GCA_025771325.1	JAKMPZ000000000	SAMN25132959	RKI_CA19_01122	Campylobacter sp. RKI_CA19_01122
GCA_025771225.1	JAKMPV000000000	SAMN25132963	RKI_CA19_01127	Campylobacter sp. RKI_CA19_01127
GCA_025771175.1	JAKMPU000000000	SAMN25132964	RKI_CA19_01128	Campylobacter sp. RKI_CA19_01128

SRA Data Details

Parameter	Value
Data volume, Gbases	51
Data volume, Mbytes	26419

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Genomic diversity of Campylobacter larii group isolates from Europe.

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