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Genome Information for Severe acute respiratory syndrome-related coronavirus
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The University of Cape Town and National Health Laboratory of Service are undertaking genomic sequencing of Severe acute respiratory syndrome coronavirus 2 in South Africa to identify and track variants of concern for the purpose of curbing its spread, as well as to inform diagnosis, patient management, and vaccine strategy.
| Accession | PRJNA805055 |
| Data Type | Genome sequencing |
| Scope | Multiisolate |
| Organism | Severe acute respiratory syndrome coronavirus 2[Taxonomy ID: 2697049] Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus; Severe acute respiratory syndrome coronavirus 2 |
| Publications (total 4) Less... | - Viana R et al., "Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa.", Nature, 2022 Mar;603(7902):679-686
More...- Viana R et al., "Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa.", Nature, 2022 Mar;603(7902):679-686
- Valley-Omar Z et al., "Reduced amplification efficiency of the RNA-dependent-RNA-polymerase target enables tracking of the Delta SARS-CoV-2 variant using routine diagnostic tests.", J Virol Methods, 2022 Apr;302:114471
- Wilkinson E et al., "A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.", Science, 2021 Oct 22;374(6566):423-431
- Tegally H et al., "Detection of a SARS-CoV-2 variant of concern in South Africa.", Nature, 2021 Apr;592(7854):438-443
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| Submission | Registration date: 10-Feb-2022
University of Cape Town and National Health Laboratory Service |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic RNA) | 2145 |
| SRA Experiments | 4165 |
| Protein Sequences | 25312 |
| Publications |
| PubMed | 4 |
| PMC | 3 |
| Other datasets |
| BioSample | 8563 |