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Genome Information for Physcomitrium patens
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1 additional project is a component of the Mutating DDM1 in Physcomitrella patens disrupts DNA methylation with a minute effect on transposon regulation and development.
We mutated PpDDM1 and the early land plant. Using BS-seq and RNA-seq, we here show that though DNA methylation is disrupted in all contexts development isn't and TE and gene differential expression are minute
Overall design: mRNA-sequencing of P. patens wild type and ddm1
| Accession | PRJNA816472; GEO: GSE198691 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Physcomitrium patens[Taxonomy ID: 3218] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium; Physcomitrium patens |
| Publications | Griess O et al., "Knockout of DDM1 in Physcomitrium patens disrupts DNA methylation with a minute effect on transposon regulation and development.", PLoS One, 2023;18(3):e0279688 |
| Submission | Registration date: 15-Mar-2022
Assaf Zemach and Nir Ohad, Plant Sciences and Food Security, Tel Aviv University |
| Relevance | Unknown |
Project Data:
| Resource Name | Number
of Links |
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| Sequence data |
| SRA Experiments | 6 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 6 |
| GEO DataSets | 1 |