Escherichia coli (ID 826489) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA826489 ID: 826489

Escherichia coli

GenomeTrakr Project: West Virginia Department of Agriculture

See Genome Information for Escherichia coli

Navigate Up

This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

Navigate Across

52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

9218 additional projects are related by organism.

Whole genome sequencing of cultured Escherichia coli and Shigella species as part of the US Food and Drug Administration's WGS surveillance effort for the traceback of foodborne pathogens.

Accession	PRJNA826489
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 2-Dec-2022 Megan Young
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	139
SRA Experiments	147
Other datasets
BioSample	147
Assembly	139

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

139
139

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_031088745.1	ABLXWV000000000	SAMN37196010	G2304448	Escherichia coli
GCA_032237375.1	ABNDSC000000000	SAMN37587042	I2304769	Escherichia coli
GCA_032237395.1	ABNDSD000000000	SAMN37587043	I2305060	Escherichia coli
GCA_032852925.1	ABOCCX000000000	SAMN37873834	I2306052_1:10 purple	Escherichia coli
GCA_032852905.1	ABOCCW000000000	SAMN37873833	I2306052_1:100 white	Escherichia coli
GCA_032852885.1	ABOCCV000000000	SAMN37873832	EC O45 1:10 white	Escherichia coli
GCA_032852855.1	ABOCCU000000000	SAMN37873831	EC O45_1:10 purple	Escherichia coli
GCA_032852845.1	ABOCCT000000000	SAMN37873830	WVDA_CDC-00-3039_1098-34-7	Escherichia coli
GCA_032852825.1	ABOCCS000000000	SAMN37873828	WVDA_CDC-06-3088_1101-44-4	Escherichia coli
GCA_032852805.1	ABOCCR000000000	SAMN37873829	WVDA_CDC-03-3014_1100-49-1	Escherichia coli
GCA_032852785.1	ABOCCQ000000000	SAMN37873836	I2306052_1:1 acid navy	Escherichia coli
GCA_032852765.1	ABOCCP000000000	SAMN37873827	WVDA_CDC-99-3311_1097-34-7	Escherichia coli
GCA_032852745.1	ABOCCO000000000	SAMN37873826	WVDA_ESC-1177_1227-12-8	Escherichia coli
GCA_032852965.1	ABOCCY000000000	SAMN37873835	I2306052_1:10 white	Escherichia coli
GCA_026652055.1	ABJQYA000000000	SAMN32008996	WVDA-M07713-I220530-2	Escherichia coli O45
GCA_026611835.1	ABJQQT000000000	SAMN32008994	WVDA-M07713-I2204515-3	Escherichia coli O45
GCA_026611635.1	ABJQQJ000000000	SAMN32008995	WVDA-M07713-I2204447-O103	Escherichia coli O103
GCA_028884615.1	ABKUMC000000000	SAMN33459121	22.0853	Escherichia coli
GCA_028884595.1	ABKUMB000000000	SAMN33459120	22.0851	Escherichia coli
GCA_028884555.1	ABKULX000000000	SAMN33459116	22.0847	Escherichia coli
GCA_028884575.1	ABKUMA000000000	SAMN33459119	22.085	Escherichia coli
GCA_028884535.1	ABKULZ000000000	SAMN33459118	22.0849	Escherichia coli
GCA_028884515.1	ABKULW000000000	SAMN33459115	22.0846	Escherichia coli
GCA_028884495.1	ABKULY000000000	SAMN33459117	22.0848	Escherichia coli
GCA_028884475.1	ABKULV000000000	SAMN33459114	22.0845	Escherichia coli
GCA_028884455.1	ABKULU000000000	SAMN33459126	22.0858	Escherichia coli
GCA_028884435.1	ABKULT000000000	SAMN33459125	22.0857	Escherichia coli
GCA_028884415.1	ABKULS000000000	SAMN33459124	22.0856	Escherichia coli
GCA_028884395.1	ABKULO000000000	SAMN33459123	22.0855	Escherichia coli
GCA_028884375.1	ABKULQ000000000	SAMN33459122	22.0854	Escherichia coli
GCA_028884355.1	ABKULP000000000	SAMN33459113	22.0844	Escherichia coli
GCA_028922105.1	ABKVYG000000000	SAMN33459112	22.0843	Escherichia coli
GCA_028669915.1	ABKRGH000000000	SAMN33325935	22.084	Escherichia coli
GCA_028669855.1	ABKRGF000000000	SAMN33325929	22.0834	Escherichia coli
GCA_028669825.1	ABKRGG000000000	SAMN33325923	22.0828	Escherichia coli
GCA_028669765.1	ABKRGE000000000	SAMN33325927	22.0832	Escherichia coli
GCA_028669525.1	ABKRGB000000000	SAMN33325926	22.0831	Escherichia coli
GCA_028669345.1	ABKRFU000000000	SAMN33325930	22.0835	Escherichia coli
GCA_028669315.1	ABKRFV000000000	SAMN33325936	22.0841	Escherichia coli
GCA_028669035.1	ABKRFG000000000	SAMN33325931	22.0836	Escherichia coli
GCA_028669015.1	ABKRFE000000000	SAMN33325928	22.0833	Escherichia coli
GCA_028668995.1	ABKRFF000000000	SAMN33325925	22.083	Escherichia coli
GCA_028668975.1	ABKRFD000000000	SAMN33325924	22.0829	Escherichia coli
GCA_028668955.1	ABKREZ000000000	SAMN33325934	22.0839	Escherichia coli
GCA_028668935.1	ABKREY000000000	SAMN33325933	22.0838	Escherichia coli
GCA_028668915.1	ABKRFC000000000	SAMN33325937	22.0842	Escherichia coli
GCA_028668895.1	ABKRFB000000000	SAMN33325932	22.0837	Escherichia coli
GCA_028668875.1	ABKRFA000000000	SAMN33325922	22.0827	Escherichia coli
GCA_029534475.1	ABLIFM000000000	SAMN34024029	22.089	Escherichia coli
GCA_029534455.1	ABLIFN000000000	SAMN34024035	22.0896	Escherichia coli
GCA_029534415.1	ABLIFJ000000000	SAMN34024026	22.0887	Escherichia coli
GCA_029534435.1	ABLIFL000000000	SAMN34024036	22.0897	Escherichia coli
GCA_029534115.1	ABLIET000000000	SAMN34024034	22.0895	Escherichia coli
GCA_029534055.1	ABLIEU000000000	SAMN34024033	22.0894	Escherichia coli
GCA_029534035.1	ABLIER000000000	SAMN34024032	22.0893	Escherichia coli
GCA_029534015.1	ABLIEP000000000	SAMN34024031	22.0892	Escherichia coli
GCA_029533995.1	ABLIEQ000000000	SAMN34024030	22.0891	Escherichia coli
GCA_029533975.1	ABLIEO000000000	SAMN34024028	22.0889	Escherichia coli
GCA_029533955.1	ABLIEN000000000	SAMN34024040	22.0901	Escherichia coli
GCA_029533935.1	ABLIEK000000000	SAMN34024038	22.0899	Escherichia coli
GCA_029533915.1	ABLIEL000000000	SAMN34024037	22.0898	Escherichia coli
GCA_029533895.1	ABLIEM000000000	SAMN34024039	22.09	Escherichia coli
GCA_029533875.1	ABLIEJ000000000	SAMN34024027	22.0888	Escherichia coli
GCA_029277345.1	ABLBOV000000000	SAMN33780003	22.0877	Escherichia coli
GCA_029277925.1	ABLBPN000000000	SAMN33779999	22.0873	Escherichia coli
GCA_029278145.1	ABLBPW000000000	SAMN33780002	22.0876	Escherichia coli
GCA_029278105.1	ABLBPU000000000	SAMN33780005	22.0879	Escherichia coli
GCA_029278085.1	ABLBPV000000000	SAMN33780004	22.0878	Escherichia coli
GCA_029278045.1	ABLBPR000000000	SAMN33780007	22.0881	Escherichia coli
GCA_029278065.1	ABLBPT000000000	SAMN33780006	22.088	Escherichia coli
GCA_029278025.1	ABLBPQ000000000	SAMN33780010	22.0884	Escherichia coli
GCA_029277945.1	ABLBPO000000000	SAMN33780008	22.0882	Escherichia coli
GCA_029278005.1	ABLBPS000000000	SAMN33780011	22.0885	Escherichia coli
GCA_029277965.1	ABLBPP000000000	SAMN33780009	22.0883	Escherichia coli
GCA_029277885.1	ABLBPM000000000	SAMN33779998	22.0852	Escherichia coli
GCA_029278165.1	ABLBPY000000000	SAMN33780000	22.0874	Escherichia coli
GCA_029278125.1	ABLBPX000000000	SAMN33780001	22.0875	Escherichia coli
GCA_029278225.1	ABLBQA000000000	SAMN33780012	22.0886	Escherichia coli
GCA_029173105.1	ABKZFJ000000000	SAMN33714523	22.0864	Escherichia coli
GCA_029173085.1	ABKZFI000000000	SAMN33714522	22.0863	Escherichia coli
GCA_029173065.1	ABKZFG000000000	SAMN33714520	22.0861	Escherichia coli
GCA_029173045.1	ABKZFH000000000	SAMN33714521	22.0862	Escherichia coli
GCA_029173005.1	ABKZFD000000000	SAMN33714530	22.0871	Escherichia coli
GCA_029173025.1	ABKZFF000000000	SAMN33714519	22.086	Escherichia coli
GCA_029172985.1	ABKZFE000000000	SAMN33714531	22.0872	Escherichia coli
GCA_029172965.1	ABKZFC000000000	SAMN33714529	22.087	Escherichia coli
GCA_029172945.1	ABKZFB000000000	SAMN33714528	22.0869	Escherichia coli
GCA_029172925.1	ABKZFA000000000	SAMN33714527	22.0868	Escherichia coli
GCA_029172905.1	ABKZEW000000000	SAMN33714517	I2300787_2	Escherichia coli
GCA_029172885.1	ABKZEZ000000000	SAMN33714518	22.0859	Escherichia coli
GCA_029173165.1	ABKZFL000000000	SAMN33714524	22.0865	Escherichia coli
GCA_029173185.1	ABKZFK000000000	SAMN33714526	22.0867	Escherichia coli
GCA_029172705.1	ABKZEO000000000	SAMN33714525	22.0866	Escherichia coli
GCA_028332565.1	ABKKPK000000000	SAMN32963474	I2204447_O121_4	Escherichia coli O121
GCA_028304025.1	ABKKLK000000000	SAMN32963470	I2203808_4	Escherichia coli O103
GCA_028304005.1	ABKKLJ000000000	SAMN32963469	I2203808_3	Escherichia coli O103
GCA_028303985.1	ABKKLL000000000	SAMN32963471	I2204447_O121_1	Escherichia coli O121
GCA_028303965.1	ABKKLM000000000	SAMN32963472	I2204447_O121_2	Escherichia coli O121
GCA_028304085.1	ABKKLN000000000	SAMN32963473	I2204447_O121_3	Escherichia coli O121
GCA_028303925.1	ABKKLI000000000	SAMN32963468	I2203808_2	Escherichia coli O103
GCA_028303865.1	ABKKLH000000000	SAMN32963467	I2203808_1	Escherichia coli O103
GCA_041506445.1	ABUHEN000000000	SAMN43367700	WVDA_M07713_EC_O103_2	Escherichia coli
GCA_041511905.1	ABUHOT000000000	SAMN43367699	WVDA_M07713_EC_O103_1	Escherichia coli
GCA_041510325.1	ABUHLW000000000	SAMN43367698	WVDA_M07713_I2404127_2	Escherichia coli
GCA_041510305.1	ABUHLV000000000	SAMN43367697	WVDA_M07713_I2404127_1	Escherichia coli
GCA_040576805.1	ABTKHO000000000	SAMN42385580	WVDA_O26_controlstrain_1-100	Escherichia coli
GCA_040576605.1	ABTKHH000000000	SAMN42385584	I2403272_5	Escherichia coli
GCA_040576225.1	ABTKGJ000000000	SAMN42385585	I2403272_6	Escherichia coli
GCA_040576205.1	ABTKGL000000000	SAMN42385587	I2402549	Escherichia coli
GCA_040576165.1	ABTKGI000000000	SAMN42385582	I2403272_3	Escherichia coli
GCA_040576175.1	ABTKGK000000000	SAMN42385581	WVDA_O26_controlstrain_A1-1	Escherichia coli
GCA_040575685.1	ABTKFK000000000	SAMN42385586	I2403272_6O	Escherichia coli
GCA_040575665.1	ABTKFJ000000000	SAMN42385583	I2403272_4	Escherichia coli
GCA_040833355.1	ABTQGZ000000000	SAMN42764704	WVDAcontrol_O145_A1-10old_K_Z	Escherichia coli
GCA_040833315.1	ABTQGX000000000	SAMN42764700	I2403389_E_B	Escherichia coli
GCA_040833295.1	ABTQGY000000000	SAMN42764703	I2403388_I_B	Escherichia coli
GCA_040833275.1	ABTQGW000000000	SAMN42764707	WVDAcontrol_O103_1-100_N_Z	Escherichia coli
GCA_040830515.1	ABTQBY000000000	SAMN42764699	I2403389_D_B	Escherichia coli
GCA_040830465.1	ABTQBW000000000	SAMN42764701	I2403388_F_Z	Escherichia coli
GCA_040829545.1	ABTQAY000000000	SAMN42764697	I2403389_B_Z	Escherichia coli
GCA_040829485.1	ABTQBA000000000	SAMN42764702	I2403388_G_Z	Escherichia coli
GCA_040831585.1	ABTQDQ000000000	SAMN42764706	WVDAcontrol_O145_A1-10_M_Z	Escherichia coli
GCA_040831525.1	ABTQDP000000000	SAMN42764705	WVDAcontrol_O145_A1-1_L_B	Escherichia coli
GCA_040831545.1	ABTQDN000000000	SAMN42764709	WVDAcontrol_O103_1-10_P_Z	Escherichia coli
GCA_040454815.1	ABTGRK000000000	SAMN42232352	I2402519	Escherichia coli
GCA_043412355.1	ABVXPB000000000	SAMN44334026	I2405108_A1-1	Escherichia coli O157:H7
GCA_043412395.1	ABVXPD000000000	SAMN44334028	I2405108_1-10	Escherichia coli O157:H7
GCA_043412375.1	ABVXPC000000000	SAMN44334027	I2405108_A1-10	Escherichia coli O157:H7
GCA_043412435.1	ABVXPE000000000	SAMN44334029	Ecctrl_O157_5108	Escherichia coli O157:H7
GCA_043412475.1	ABVXPF000000000	SAMN44334030	Ecctrl_O157_gray	Escherichia coli O157:H7
GCA_042351855.1	ABVFMQ000000000	SAMN43906773	WVDA_M07713_I2404882_A	Escherichia coli
GCA_042346735.1	ABVFJC000000000	SAMN43906768	WVDA_M07713_I2404417_A	Escherichia coli
GCA_042346755.1	ABVFJG000000000	SAMN43906771	WVDA_M07713_I2404722_B	Escherichia coli
GCA_042346715.1	ABVFJH000000000	SAMN43906774	WVDA_M07713_I2404882_B	Escherichia coli
GCA_042346695.1	ABVFJE000000000	SAMN43906770	WVDA_M07713_I2404722_A	Escherichia coli
GCA_042346675.1	ABVFJF000000000	SAMN43906769	WVDA_M07713_ECO103_CTRL1	Escherichia coli
GCA_042346795.1	ABVFJJ000000000	SAMN43906776	WVDA_M07713_I2404882_C	Escherichia coli
GCA_042346775.1	ABVFJI000000000	SAMN43906775	WVDA_M07713_ECO121_CTRL2	Escherichia coli
GCA_042357155.1	ABVFWN000000000	SAMN43906777	WVDA_M07713_ECO103_CTRL2	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	91
Data volume, Mbytes	55987

BioProject

Result Filters

Display Settings:

Send to:

Escherichia coli

GenomeTrakr Project: West Virginia Department of Agriculture

Supplemental Content

Related information

Recent activity