ID 840750 - BioProject

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Accession: PRJEB52681 ID: 840750

EMG produced TPA metagenomics assembly of PRJNA599289 data set (Gut microbiome of honey bees in china).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA599289, and was assembled with metaSPAdes v3. More...

Accession	PRJEB52681
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 20-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3558
WGS master	66
Publications
PubMed	1
PMC	1
Other datasets
BioSample	66
Assembly	66

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

66
66

Assembly	WGS	BioSample	Taxonomy
GCA_945291405.1	CALYQZ000000000	SAMEA110290086	Apibacter mensalis
GCA_945279245.1	CALYQA000000000	SAMEA110290044	Bartonella apis
GCA_945266295.1	CALYOQ000000000	SAMEA110290028	Bartonella apis
GCA_945286335.1	CALYQO000000000	SAMEA110290059	Bifidobacterium coryneforme
GCA_945283135.1	CALYQG000000000	SAMEA110290065	Enterobacter cloacae
GCA_945277355.1	CALYPS000000000	SAMEA110290080	Enterobacter huaxiensis
GCA_945283555.1	CALYQI000000000	SAMEA110290058	Escherichia coli
GCA_945269355.1	CALYOV000000000	SAMEA110290081	Frischella perrara
GCA_945279915.1	CALYQC000000000	SAMEA110290046	Frischella perrara
GCA_945274575.1	CALYPN000000000	SAMEA110290089	Gilliamella apicola
GCA_945270505.1	CALYPA000000000	SAMEA110290091	Gilliamella apicola
GCA_945273725.1	CALYPK000000000	SAMEA110290049	Gilliamella apicola
GCA_945271135.1	CALYPE000000000	SAMEA110290030	Gilliamella apicola
GCA_945288635.1	CALYQT000000000	SAMEA110290031	Klebsiella oxytoca
GCA_945278655.1	CALYPX000000000	SAMEA110290038	Klebsiella pneumoniae
GCA_945289365.1	CALYQU000000000	SAMEA110290052	Lactobacillus apis
GCA_945267225.1	CALYOT000000000	SAMEA110290079	Lactobacillus panisapium
GCA_945286325.1	CALYQN000000000	SAMEA110290060	Melissococcus plutonius
GCA_945270975.1	CALYPC000000000	SAMEA110290066	Providencia alcalifaciens
GCA_945279255.1	CALYPZ000000000	SAMEA110290085	Snodgrassella alvi
GCA_945276975.1	CALYPQ000000000	SAMEA110290063	Snodgrassella alvi
GCA_945271025.1	CALYPD000000000	SAMEA110290070	Weissella confusa
GCA_945280365.1	CALYQD000000000	SAMEA110290042	uncultured Apibacter sp.
GCA_945277285.1	CALYPR000000000	SAMEA110290076	uncultured Bartonella sp.
GCA_945266055.1	CALYOR000000000	SAMEA110290032	uncultured Bartonella sp.
GCA_945285465.1	CALYQK000000000	SAMEA110290088	uncultured Bartonella sp.
GCA_945285915.1	CALYQL000000000	SAMEA110290078	uncultured Bartonella sp.
GCA_945269915.1	CALYOY000000000	SAMEA110290075	uncultured Bifidobacterium sp.
GCA_945270115.1	CALYOZ000000000	SAMEA110290068	uncultured Bifidobacterium sp.
GCA_945270645.1	CALYPB000000000	SAMEA110290064	uncultured Bifidobacterium sp.
GCA_945291205.1	CALYQX000000000	SAMEA110290083	uncultured Bifidobacterium sp.
GCA_945278715.1	CALYPV000000000	SAMEA110290041	uncultured Commensalibacter sp.
GCA_945266285.1	CALYOP000000000	SAMEA110290034	uncultured Commensalibacter sp.
GCA_945278685.1	CALYPW000000000	SAMEA110290039	uncultured Dolosicoccus sp.
GCA_945292135.1	CALYRA000000000	SAMEA110290056	uncultured Dysgonomonas sp.
GCA_945273835.1	CALYPL000000000	SAMEA110290087	uncultured Dysgonomonas sp.
GCA_945288535.1	CALYQQ000000000	SAMEA110290072	uncultured Enterobacterales bacterium
GCA_945271245.1	CALYPF000000000	SAMEA110290048	uncultured Enterobacteriaceae bacterium
GCA_945290265.1	CALYQW000000000	SAMEA110290071	uncultured Erwinia sp.
GCA_945271295.1	CALYPG000000000	SAMEA110290051	uncultured Gilliamella sp.
GCA_945293455.1	CALYRB000000000	SAMEA110290035	uncultured Gilliamella sp.
GCA_945273075.1	CALYPI000000000	SAMEA110290069	uncultured Gilliamella sp.
GCA_945269515.1	CALYOX000000000	SAMEA110290077	uncultured Gilliamella sp.
GCA_945291235.1	CALYQY000000000	SAMEA110290084	uncultured Gilliamella sp.
GCA_945296155.1	CALYRC000000000	SAMEA110290074	uncultured Gilliamella sp.
GCA_945276085.1	CALYPO000000000	SAMEA110290029	uncultured Gilliamella sp.
GCA_945269285.1	CALYOW000000000	SAMEA110290043	uncultured Gilliamella sp.
GCA_945285405.1	CALYQJ000000000	SAMEA110290082	uncultured Lactobacillaceae bacterium
GCA_945273735.1	CALYPJ000000000	SAMEA110290054	uncultured Lactobacillaceae bacterium
GCA_945288655.1	CALYQS000000000	SAMEA110290037	uncultured Lactobacillus sp.
GCA_945288525.1	CALYQP000000000	SAMEA110290036	uncultured Lactobacillus sp.
GCA_945279565.1	CALYQB000000000	SAMEA110290047	uncultured Lactobacillus sp.
GCA_945285975.1	CALYQM000000000	SAMEA110290090	uncultured Lactobacillus sp.
GCA_945273885.1	CALYPM000000000	SAMEA110290050	uncultured Lactobacillus sp.
GCA_945281075.1	CALYQE000000000	SAMEA110290026	uncultured Lactobacillus sp.
GCA_945277915.1	CALYPU000000000	SAMEA110290062	uncultured Lactobacillus sp.
GCA_945288625.1	CALYQR000000000	SAMEA110290040	uncultured Lactobacillus sp.
GCA_945290125.1	CALYQV000000000	SAMEA110290073	uncultured Lactobacillus sp.
GCA_945277975.1	CALYPT000000000	SAMEA110290055	uncultured Lactobacillus sp.
GCA_945276405.1	CALYPP000000000	SAMEA110290067	uncultured Lactobacillus sp.
GCA_945267275.1	CALYOU000000000	SAMEA110290027	uncultured Lactobacillus sp.
GCA_945278855.1	CALYPY000000000	SAMEA110290045	uncultured Leclercia sp.
GCA_945282455.1	CALYQF000000000	SAMEA110290053	uncultured Neisseriaceae bacterium
GCA_945267035.1	CALYOS000000000	SAMEA110290033	uncultured Neisseriaceae bacterium
GCA_945271495.1	CALYPH000000000	SAMEA110290057	uncultured Synechococcus sp.
GCA_945283395.1	CALYQH000000000	SAMEA110290061	uncultured Ventosimonas sp.

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EMG produced TPA metagenomics assembly of PRJNA599289 data set (Gut microbiome of honey bees in china).

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