ID 840839 - BioProject

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Accession: PRJEB52946 ID: 840839

EMG produced TPA metagenomics assembly of PRJEB15296 data set (Structure and function of the fecal microbiota in diarrhoeic neonatal piglets).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB15296, and was assembled with metaSPAdes v3. More...

Accession	PRJEB52946
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 20-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3104
WGS master	58
Publications
PubMed	1
PMC	1
Other datasets
BioSample	58
Assembly	58

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

58
58

Assembly	WGS	BioSample	Taxonomy
GCA_945904475.1	CAMDPM000000000	SAMEA110405872	Alistipes senegalensis
GCA_945901435.1	CAMDLB000000000	SAMEA110405867	Bacteroides fragilis
GCA_945902835.1	CAMDNA000000000	SAMEA110405847	Bacteroides thetaiotaomicron
GCA_945900355.1	CAMDJB000000000	SAMEA110405854	Bacteroides xylanisolvens
GCA_945901455.1	CAMDKZ000000000	SAMEA110405822	Bilophila wadsworthia
GCA_945895905.1	CAMDEH000000000	SAMEA110405838	Butyricimonas virosa
GCA_945896015.1	CAMDEI000000000	SAMEA110405866	Desulfovibrio piger
GCA_945899955.1	CAMDIR000000000	SAMEA110405875	Eisenbergiella massiliensis
GCA_945906665.1	CAMDRD000000000	SAMEA110405877	Escherichia coli
GCA_945901345.1	CAMDKV000000000	SAMEA110405853	Fusobacterium mortiferum
GCA_945900165.1	CAMDJJ000000000	SAMEA110405855	Fusobacterium varium
GCA_945901385.1	CAMDKW000000000	SAMEA110405840	Lactobacillus amylovorus
GCA_945899315.1	CAMDIM000000000	SAMEA110405868	Parabacteroides distasonis
GCA_945908285.1	CAMDTT000000000	SAMEA110405821	Phascolarctobacterium succinatutens
GCA_945900345.1	CAMDIY000000000	SAMEA110405862	Streptococcus pasteurianus
GCA_945900145.1	CAMDIV000000000	SAMEA110405859	Veillonella caviae
GCA_945908315.1	CAMDTP000000000	SAMEA110405865	[Clostridium] scindens
GCA_945898495.1	CAMDIG000000000	SAMEA110405851	[Clostridium] symbiosum
GCA_945900265.1	CAMDJE000000000	SAMEA110405860	uncultured Alistipes sp.
GCA_945898335.1	CAMDIE000000000	SAMEA110405836	uncultured Alistipes sp.
GCA_945895655.1	CAMDEG000000000	SAMEA110405857	uncultured Anaeromassilibacillus sp.
GCA_945903385.1	CAMDOB000000000	SAMEA110405826	uncultured Bacteroidales bacterium
GCA_945900065.1	CAMDIX000000000	SAMEA110405831	uncultured Bacteroidales bacterium
GCA_945904435.1	CAMDPL000000000	SAMEA110405824	uncultured Bacteroidales bacterium
GCA_945905935.1	CAMDQM000000000	SAMEA110405835	uncultured Bacteroidales bacterium
GCA_945901545.1	CAMDLD000000000	SAMEA110405842	uncultured Bacteroidales bacterium
GCA_945897605.1	CAMDFV000000000	SAMEA110405837	uncultured Bacteroidales bacterium
GCA_945900365.1	CAMDJD000000000	SAMEA110405841	uncultured Bacteroidales bacterium
GCA_945899945.1	CAMDIT000000000	SAMEA110405849	uncultured Bacteroidales bacterium
GCA_945904545.1	CAMDPN000000000	SAMEA110405820	uncultured Bacteroidales bacterium
GCA_945899545.1	CAMDIN000000000	SAMEA110405832	uncultured Bacteroides sp.
GCA_945898345.1	CAMDID000000000	SAMEA110405869	uncultured Bacteroides sp.
GCA_945898405.1	CAMDIC000000000	SAMEA110405873	uncultured Clostridia bacterium
GCA_945902725.1	CAMDMX000000000	SAMEA110405834	uncultured Clostridia bacterium
GCA_945905795.1	CAMDQG000000000	SAMEA110405876	uncultured Clostridia bacterium
GCA_945898485.1	CAMDIF000000000	SAMEA110405856	uncultured Clostridia bacterium
GCA_945900095.1	CAMDJA000000000	SAMEA110405828	uncultured Clostridia bacterium
GCA_945903325.1	CAMDNP000000000	SAMEA110405829	uncultured Clostridia bacterium
GCA_945895835.1	CAMDEJ000000000	SAMEA110405827	uncultured Clostridia bacterium
GCA_945900895.1	CAMDJR000000000	SAMEA110405852	uncultured Clostridia bacterium
GCA_945902465.1	CAMDMW000000000	SAMEA110405870	uncultured Clostridia bacterium
GCA_945897295.1	CAMDFI000000000	SAMEA110405871	uncultured Clostridium sp.
GCA_945906095.1	CAMDQS000000000	SAMEA110405864	uncultured Collinsella sp.
GCA_945905785.1	CAMDQK000000000	SAMEA110405861	uncultured Faecalicatena sp.
GCA_945903355.1	CAMDNT000000000	SAMEA110405850	uncultured Fusobacterium sp.
GCA_945901375.1	CAMDKX000000000	SAMEA110405845	uncultured Fusobacterium sp.
GCA_945899595.1	CAMDIQ000000000	SAMEA110405844	uncultured Lachnoclostridium sp.
GCA_945903485.1	CAMDNY000000000	SAMEA110405874	uncultured Lactobacillus sp.
GCA_945900015.1	CAMDJC000000000	SAMEA110405846	uncultured Odoribacter sp.
GCA_945900475.1	CAMDIZ000000000	SAMEA110405843	uncultured Oscillibacter sp.
GCA_945905825.1	CAMDQI000000000	SAMEA110405830	uncultured Prevotella sp.
GCA_945898775.1	CAMDII000000000	SAMEA110405825	uncultured Solobacterium sp.
GCA_945907595.1	CAMDTJ000000000	SAMEA110405858	uncultured Solobacterium sp.
GCA_945900135.1	CAMDIW000000000	SAMEA110405833	uncultured Sutterella sp.
GCA_945899975.1	CAMDIU000000000	SAMEA110405863	uncultured Sutterellaceae bacterium
GCA_945899915.1	CAMDIS000000000	SAMEA110405823	uncultured bacterium
GCA_945906535.1	CAMDQX000000000	SAMEA110405839	uncultured bacterium
GCA_945897535.1	CAMDFM000000000	SAMEA110405848	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJEB15296 data set (Structure and function of the fecal microbiota in diarrhoeic neonatal piglets).

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