ID 843023 - BioProject

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Accession: PRJEB53141 ID: 843023

EMG produced TPA metagenomics assembly of PRJNA760651 data set (Exploring the possible link between the gut microbiome and fat deposition in pigs).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA760651, and was assembled with metaSPAdes v3. More...

Accession	PRJEB53141
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 27-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3061
WGS master	144
Publications
PubMed	1
PMC	1
Other datasets
BioSample	144
Assembly	144

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

144
144

Assembly	WGS	BioSample	Taxonomy
GCA_946042295.1	CAMGDI000000000	SAMEA110426416	Bifidobacterium thermophilum
GCA_945965415.1	CAMFNF000000000	SAMEA110426405	Dorea longicatena
GCA_945980095.1	CAMFQM000000000	SAMEA110426382	Escherichia coli
GCA_946007115.1	CAMFZX000000000	SAMEA110426426	Lactobacillus amylovorus
GCA_945989215.1	CAMFUG000000000	SAMEA110426391	Lactobacillus delbrueckii
GCA_946040835.1	CAMGCM000000000	SAMEA110426467	Lactobacillus johnsonii
GCA_945966525.1	CAMFOB000000000	SAMEA110426434	Megasphaera elsdenii
GCA_945971405.1	CAMFPA000000000	SAMEA110426427	Methanobrevibacter gottschalkii
GCA_946006995.1	CAMFZT000000000	SAMEA110426387	Phascolarctobacterium succinatutens
GCA_945965405.1	CAMFNE000000000	SAMEA110426492	Ruminococcus bromii
GCA_945971225.1	CAMFOT000000000	SAMEA110426490	Streptococcus hyointestinalis
GCA_946002105.1	CAMFYQ000000000	SAMEA110426385	Subdoligranulum variabile
GCA_945971345.1	CAMFOY000000000	SAMEA110426393	Turicibacter sanguinis
GCA_946041095.1	CAMGCQ000000000	SAMEA110426388	uncultured Agathobacter sp.
GCA_945988925.1	CAMFTT000000000	SAMEA110426453	uncultured Anaeromassilibacillus sp.
GCA_945988865.1	CAMFTQ000000000	SAMEA110426469	uncultured Anaeromassilibacillus sp.
GCA_945971295.1	CAMFPE000000000	SAMEA110426408	uncultured Bacteroidales bacterium
GCA_946041065.1	CAMGCP000000000	SAMEA110426413	uncultured Bacteroidales bacterium
GCA_946006975.1	CAMFZR000000000	SAMEA110426447	uncultured Bacteroidales bacterium
GCA_945988935.1	CAMFTV000000000	SAMEA110426406	uncultured Bacteroidales bacterium
GCA_945981985.1	CAMFRM000000000	SAMEA110426463	uncultured Bacteroidales bacterium
GCA_945966485.1	CAMFNQ000000000	SAMEA110426420	uncultured Bacteroidales bacterium
GCA_945979855.1	CAMFQC000000000	SAMEA110426355	uncultured Bacteroidales bacterium
GCA_945982015.1	CAMFRP000000000	SAMEA110426392	uncultured Bacteroidales bacterium
GCA_945982095.1	CAMFRR000000000	SAMEA110426425	uncultured Bacteroidales bacterium
GCA_945983015.1	CAMFSN000000000	SAMEA110426415	uncultured Bacteroidales bacterium
GCA_945976895.1	CAMFPQ000000000	SAMEA110426432	uncultured Bacteroidales bacterium
GCA_945980725.1	CAMFQX000000000	SAMEA110426398	uncultured Bacteroidales bacterium
GCA_945979935.1	CAMFQE000000000	SAMEA110426459	uncultured Bacteroidales bacterium
GCA_946041335.1	CAMGCY000000000	SAMEA110426373	uncultured Bacteroidales bacterium
GCA_946041275.1	CAMGCS000000000	SAMEA110426357	uncultured Bacteroidales bacterium
GCA_945988765.1	CAMFTP000000000	SAMEA110426410	uncultured Bacteroidales bacterium
GCA_945989255.1	CAMFUD000000000	SAMEA110426389	uncultured Bacteroides sp.
GCA_945971335.1	CAMFPC000000000	SAMEA110426402	uncultured Butyricicoccus sp.
GCA_946041135.1	CAMGCR000000000	SAMEA110426491	uncultured Clostridia bacterium
GCA_945988635.1	CAMFTK000000000	SAMEA110426445	uncultured Clostridia bacterium
GCA_946041555.1	CAMGDC000000000	SAMEA110426368	uncultured Clostridia bacterium
GCA_946006955.1	CAMFZP000000000	SAMEA110426472	uncultured Clostridia bacterium
GCA_946007135.1	CAMGAA000000000	SAMEA110426353	uncultured Clostridia bacterium
GCA_946004305.1	CAMFZJ000000000	SAMEA110426486	uncultured Clostridia bacterium
GCA_946006895.1	CAMFZO000000000	SAMEA110426443	uncultured Clostridia bacterium
GCA_945989005.1	CAMFTX000000000	SAMEA110426376	uncultured Clostridia bacterium
GCA_946006925.1	CAMFZM000000000	SAMEA110426485	uncultured Clostridia bacterium
GCA_946042355.1	CAMGDL000000000	SAMEA110426460	uncultured Clostridia bacterium
GCA_946040935.1	CAMGCN000000000	SAMEA110426476	uncultured Clostridia bacterium
GCA_946006945.1	CAMFZN000000000	SAMEA110426435	uncultured Clostridia bacterium
GCA_946006915.1	CAMFZK000000000	SAMEA110426488	uncultured Clostridia bacterium
GCA_946041635.1	CAMGDG000000000	SAMEA110426452	uncultured Clostridia bacterium
GCA_946007065.1	CAMFZY000000000	SAMEA110426394	uncultured Clostridia bacterium
GCA_946006985.1	CAMFZQ000000000	SAMEA110426363	uncultured Clostridia bacterium
GCA_946002045.1	CAMFYM000000000	SAMEA110426442	uncultured Clostridia bacterium
GCA_946042585.1	CAMGDO000000000	SAMEA110426449	uncultured Clostridia bacterium
GCA_946006935.1	CAMFZL000000000	SAMEA110426489	uncultured Clostridia bacterium
GCA_946042285.1	CAMGDK000000000	SAMEA110426456	uncultured Clostridia bacterium
GCA_945989305.1	CAMFUL000000000	SAMEA110426358	uncultured Clostridia bacterium
GCA_945988915.1	CAMFTS000000000	SAMEA110426493	uncultured Clostridia bacterium
GCA_946007005.1	CAMFZS000000000	SAMEA110426350	uncultured Clostridia bacterium
GCA_945988755.1	CAMFTL000000000	SAMEA110426424	uncultured Clostridia bacterium
GCA_946002265.1	CAMFYW000000000	SAMEA110426404	uncultured Clostridia bacterium
GCA_945988625.1	CAMFTM000000000	SAMEA110426403	uncultured Clostridia bacterium
GCA_945971215.1	CAMFOS000000000	SAMEA110426466	uncultured Clostridia bacterium
GCA_945982555.1	CAMFSD000000000	SAMEA110426366	uncultured Clostridia bacterium
GCA_945971735.1	CAMFPK000000000	SAMEA110426429	uncultured Clostridia bacterium
GCA_945977595.1	CAMFPV000000000	SAMEA110426444	uncultured Clostridia bacterium
GCA_945971755.1	CAMFPJ000000000	SAMEA110426454	uncultured Clostridia bacterium
GCA_946003865.1	CAMFZI000000000	SAMEA110426374	uncultured Clostridia bacterium
GCA_946002315.1	CAMFYU000000000	SAMEA110426480	uncultured Clostridia bacterium
GCA_945981975.1	CAMFRL000000000	SAMEA110426482	uncultured Clostridia bacterium
GCA_945965275.1	CAMFNB000000000	SAMEA110426471	uncultured Clostridia bacterium
GCA_945982115.1	CAMFRT000000000	SAMEA110426428	uncultured Clostridia bacterium
GCA_945980065.1	CAMFQJ000000000	SAMEA110426477	uncultured Clostridia bacterium
GCA_945971505.1	CAMFPG000000000	SAMEA110426361	uncultured Clostridia bacterium
GCA_945982085.1	CAMFRQ000000000	SAMEA110426455	uncultured Clostridia bacterium
GCA_945980055.1	CAMFQK000000000	SAMEA110426436	uncultured Clostridia bacterium
GCA_945980035.1	CAMFQG000000000	SAMEA110426448	uncultured Clostridia bacterium
GCA_945982565.1	CAMFSE000000000	SAMEA110426381	uncultured Clostridia bacterium
GCA_945971925.1	CAMFPN000000000	SAMEA110426470	uncultured Clostridia bacterium
GCA_945982035.1	CAMFRO000000000	SAMEA110426475	uncultured Clostridia bacterium
GCA_945979915.1	CAMFQF000000000	SAMEA110426481	uncultured Clostridia bacterium
GCA_945971305.1	CAMFOX000000000	SAMEA110426417	uncultured Clostridia bacterium
GCA_945981925.1	CAMFRK000000000	SAMEA110426458	uncultured Clostridia bacterium
GCA_945971795.1	CAMFPM000000000	SAMEA110426384	uncultured Clostridia bacterium
GCA_945971715.1	CAMFPH000000000	SAMEA110426433	uncultured Clostridia bacterium
GCA_946041195.1	CAMGCU000000000	SAMEA110426400	uncultured Clostridium sp.
GCA_946041055.1	CAMGCO000000000	SAMEA110426418	uncultured Collinsella sp.
GCA_946002035.1	CAMFYK000000000	SAMEA110426440	uncultured Coriobacteriaceae bacterium
GCA_945988745.1	CAMFTN000000000	SAMEA110426401	uncultured Erysipelotrichaceae bacterium
GCA_945979765.1	CAMFQA000000000	SAMEA110426421	uncultured Erysipelotrichaceae bacterium
GCA_945981915.1	CAMFRJ000000000	SAMEA110426386	uncultured Erysipelotrichaceae bacterium
GCA_945971775.1	CAMFPL000000000	SAMEA110426468	uncultured Erysipelotrichaceae bacterium
GCA_946007085.1	CAMFZZ000000000	SAMEA110426431	uncultured Eubacterium sp.
GCA_945982575.1	CAMFSF000000000	SAMEA110426395	uncultured Eubacterium sp.
GCA_945979635.1	CAMFPZ000000000	SAMEA110426483	uncultured Eubacterium sp.
GCA_945980015.1	CAMFQI000000000	SAMEA110426451	uncultured Eubacterium sp.
GCA_945980375.1	CAMFQO000000000	SAMEA110426439	uncultured Eubacterium sp.
GCA_945983025.1	CAMFSO000000000	SAMEA110426474	uncultured Firmicutes bacterium
GCA_945988655.1	CAMFTJ000000000	SAMEA110426437	uncultured Firmicutes bacterium
GCA_946002065.1	CAMFYN000000000	SAMEA110426438	uncultured Firmicutes bacterium
GCA_945989015.1	CAMFTY000000000	SAMEA110426367	uncultured Lachnobacterium sp.
GCA_945971355.1	CAMFPD000000000	SAMEA110426412	uncultured Lachnobacterium sp.
GCA_945977095.1	CAMFPS000000000	SAMEA110426464	uncultured Lachnospiraceae bacterium
GCA_945977115.1	CAMFPR000000000	SAMEA110426478	uncultured Lachnospiraceae bacterium
GCA_945971315.1	CAMFOW000000000	SAMEA110426397	uncultured Lachnospiraceae bacterium
GCA_945982105.1	CAMFRU000000000	SAMEA110426446	uncultured Lachnospiraceae bacterium
GCA_946007015.1	CAMFZV000000000	SAMEA110426360	uncultured Lachnospiraceae bacterium
GCA_946007055.1	CAMFZW000000000	SAMEA110426390	uncultured Lachnospiraceae bacterium
GCA_946002025.1	CAMFYJ000000000	SAMEA110426487	uncultured Lachnospiraceae bacterium
GCA_945973785.1	CAMFPO000000000	SAMEA110426356	uncultured Lachnospiraceae bacterium
GCA_946041655.1	CAMGDH000000000	SAMEA110426377	uncultured Lachnospiraceae bacterium
GCA_945988905.1	CAMFTU000000000	SAMEA110426407	uncultured Lachnospiraceae bacterium
GCA_946002335.1	CAMFYV000000000	SAMEA110426371	uncultured Lachnospiraceae bacterium
GCA_946040795.1	CAMGCK000000000	SAMEA110426484	uncultured Lachnospiraceae bacterium
GCA_946002355.1	CAMFZB000000000	SAMEA110426378	uncultured Lactobacillus sp.
GCA_945980025.1	CAMFQH000000000	SAMEA110426465	uncultured Lactobacillus sp.
GCA_945971515.1	CAMFPF000000000	SAMEA110426359	uncultured Lactobacillus sp.
GCA_945971245.1	CAMFOZ000000000	SAMEA110426462	uncultured Lactobacillus sp.
GCA_946002215.1	CAMFYT000000000	SAMEA110426372	uncultured Methanobrevibacter sp.
GCA_946041535.1	CAMGDB000000000	SAMEA110426383	uncultured Olsenella sp.
GCA_945982595.1	CAMFSG000000000	SAMEA110426362	uncultured Prevotella sp.
GCA_945971615.1	CAMFPI000000000	SAMEA110426379	uncultured Prevotella sp.
GCA_945979625.1	CAMFPY000000000	SAMEA110426422	uncultured Prevotella sp.
GCA_946002305.1	CAMFYY000000000	SAMEA110426411	uncultured Prevotella sp.
GCA_946002085.1	CAMFYP000000000	SAMEA110426461	uncultured Prevotellaceae bacterium
GCA_945979865.1	CAMFQD000000000	SAMEA110426430	uncultured Prevotellaceae bacterium
GCA_946002055.1	CAMFYL000000000	SAMEA110426419	uncultured Roseburia sp.
GCA_946007025.1	CAMFZU000000000	SAMEA110426399	uncultured Roseburia sp.
GCA_946007105.1	CAMGAB000000000	SAMEA110426414	uncultured Ruminococcus sp.
GCA_945988995.1	CAMFTW000000000	SAMEA110426354	uncultured Ruminococcus sp.
GCA_946007075.1	CAMGAC000000000	SAMEA110426369	uncultured Ruminococcus sp.
GCA_945989265.1	CAMFUE000000000	SAMEA110426380	uncultured Ruminococcus sp.
GCA_946040805.1	CAMGCL000000000	SAMEA110426479	uncultured Ruminococcus sp.
GCA_945988945.1	CAMFTR000000000	SAMEA110426457	uncultured Selenomonadaceae bacterium
GCA_945971285.1	CAMFOV000000000	SAMEA110426409	uncultured Solobacterium sp.
GCA_945989285.1	CAMFUK000000000	SAMEA110426375	uncultured Solobacterium sp.
GCA_945965235.1	CAMFMY000000000	SAMEA110426396	uncultured Streptococcus sp.
GCA_946002185.1	CAMFYX000000000	SAMEA110426351	uncultured Treponema sp.
GCA_946041255.1	CAMGCT000000000	SAMEA110426352	uncultured Treponema sp.
GCA_946002175.1	CAMFYR000000000	SAMEA110426370	uncultured Treponema sp.
GCA_945971235.1	CAMFOU000000000	SAMEA110426450	uncultured Treponema sp.
GCA_945988775.1	CAMFTO000000000	SAMEA110426423	uncultured bacterium
GCA_945971445.1	CAMFPB000000000	SAMEA110426365	uncultured bacterium
GCA_945980085.1	CAMFQL000000000	SAMEA110426441	uncultured bacterium
GCA_945979895.1	CAMFQB000000000	SAMEA110426473	uncultured bacterium
GCA_946002275.1	CAMFYZ000000000	SAMEA110426364	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA760651 data set (Exploring the possible link between the gut microbiome and fat deposition in pigs).

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