ID 859363 - BioProject

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Accession: PRJEB54755 ID: 859363

EMG produced TPA metagenomics assembly of PRJNA544171 data set (Zebrafish Gut Microbiome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA544171, and was assembled with metaSPAdes v3. More...

Accession	PRJEB54755
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 16-Jul-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1944
WGS master	51
Publications
PubMed	1
PMC	1
Other datasets
BioSample	51
Assembly	51

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

51
51

Assembly	WGS	BioSample	Taxonomy
GCA_945952615.1	CAMFIR000000000	SAMEA110422309	Acinetobacter ursingii
GCA_945952555.1	CAMFIN000000000	SAMEA110422311	Aeromonas hydrophila
GCA_945952205.1	CAMFHH000000000	SAMEA110422302	Aeromonas jandaei
GCA_945952595.1	CAMFIC000000000	SAMEA110422299	Cetobacterium somerae
GCA_945952385.1	CAMFHY000000000	SAMEA110422320	Chitinibacter tainanensis
GCA_945952455.1	CAMFIL000000000	SAMEA110422306	Chryseobacterium indologenes
GCA_945952305.1	CAMFIZ000000000	SAMEA110422316	Comamonas thiooxydans
GCA_945952275.1	CAMFHM000000000	SAMEA110422330	Enterobacter roggenkampii
GCA_945952505.1	CAMFIM000000000	SAMEA110422308	Leclercia adecarboxylata
GCA_945952535.1	CAMFIV000000000	SAMEA110422313	Phytobacter massiliensis
GCA_945952525.1	CAMFIJ000000000	SAMEA110422303	Plesiomonas shigelloides
GCA_945952515.1	CAMFIT000000000	SAMEA110422317	Pseudomonas mosselii
GCA_945952185.1	CAMFHJ000000000	SAMEA110422286	Shewanella oneidensis
GCA_945952565.1	CAMFIQ000000000	SAMEA110422307	uncultured Acinetobacter sp.
GCA_945952475.1	CAMFIO000000000	SAMEA110422305	uncultured Actinomycetes bacterium
GCA_945952055.1	CAMFHB000000000	SAMEA110422290	uncultured Alsobacter sp.
GCA_945952485.1	CAMFIK000000000	SAMEA110422324	uncultured Aquitalea sp.
GCA_945952095.1	CAMFHL000000000	SAMEA110422291	uncultured Arsenicibacter sp.
GCA_945952075.1	CAMFHF000000000	SAMEA110422298	uncultured Bosea sp.
GCA_945952065.1	CAMFGY000000000	SAMEA110422283	uncultured Burkholderiales bacterium
GCA_945952365.1	CAMFHX000000000	SAMEA110422328	uncultured Cetobacterium sp.
GCA_945952445.1	CAMFIG000000000	SAMEA110422327	uncultured Chlamydiae bacterium
GCA_945952495.1	CAMFID000000000	SAMEA110422310	uncultured Elizabethkingia sp.
GCA_945952605.1	CAMFJA000000000	SAMEA110422296	uncultured Fimbriimonas sp.
GCA_945952345.1	CAMFIS000000000	SAMEA110422332	uncultured Fimbriimonas sp.
GCA_945952395.1	CAMFIU000000000	SAMEA110422333	uncultured Flavobacterium sp.
GCA_945952215.1	CAMFHC000000000	SAMEA110422288	uncultured Francisellaceae bacterium
GCA_945952115.1	CAMFHA000000000	SAMEA110422293	uncultured Legionella sp.
GCA_945952375.1	CAMFHV000000000	SAMEA110422319	uncultured Legionellales bacterium
GCA_945952575.1	CAMFIY000000000	SAMEA110422312	uncultured Leucobacter sp.
GCA_945952085.1	CAMFGU000000000	SAMEA110422300	uncultured Microbacterium sp.
GCA_945952035.1	CAMFGV000000000	SAMEA110422301	uncultured Microbacterium sp.
GCA_945952435.1	CAMFHZ000000000	SAMEA110422314	uncultured Microbacterium sp.
GCA_945952225.1	CAMFHP000000000	SAMEA110422292	uncultured Myxococcaceae bacterium
GCA_945952195.1	CAMFHG000000000	SAMEA110422285	uncultured Neisseriaceae bacterium
GCA_945952355.1	CAMFIW000000000	SAMEA110422323	uncultured Phenylobacterium sp.
GCA_945952175.1	CAMFHW000000000	SAMEA110422294	uncultured Phenylobacterium sp.
GCA_945952465.1	CAMFIB000000000	SAMEA110422329	uncultured Pseudomonadota bacterium
GCA_945952425.1	CAMFIX000000000	SAMEA110422326	uncultured Pseudorhodobacter sp.
GCA_945952335.1	CAMFIH000000000	SAMEA110422331	uncultured Reyranella sp.
GCA_945952145.1	CAMFHD000000000	SAMEA110422287	uncultured Rhizobium sp.
GCA_945952045.1	CAMFHE000000000	SAMEA110422295	uncultured Rhizobium sp.
GCA_945952315.1	CAMFIE000000000	SAMEA110422318	uncultured Rhizobium sp.
GCA_945952245.1	CAMFHT000000000	SAMEA110422289	uncultured Rhizobium sp.
GCA_945952415.1	CAMFIF000000000	SAMEA110422321	uncultured Rhizobium sp.
GCA_945952585.1	CAMFII000000000	SAMEA110422304	uncultured Rhodobacter sp.
GCA_945952025.1	CAMFGW000000000	SAMEA110422284	uncultured Rhodobacteraceae bacterium
GCA_945952105.1	CAMFGZ000000000	SAMEA110422297	uncultured Rhodospirillaceae bacterium
GCA_945952545.1	CAMFIP000000000	SAMEA110422322	uncultured Roseateles sp.
GCA_945952405.1	CAMFIA000000000	SAMEA110422315	uncultured Stenotrophomonas sp.
GCA_945952325.1	CAMFJB000000000	SAMEA110422325	uncultured Verrucomicrobiales bacterium

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EMG produced TPA metagenomics assembly of PRJNA544171 data set (Zebrafish Gut Microbiome).

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