soil metagenome (ID 889009) - BioProject

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Accession: PRJNA889009 ID: 889009

soil metagenome

Desert soil microbiota culturomics

Two original soil samples and a total of 360 culture-ebriched samples (soil + medium + temperature) were used to in-depth study the desert soil microbiota. Raw sequence reads, metagenomes, metagenomic assembly genomes, pure isolates.

Accession	PRJNA889009
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	soil metagenome[Taxonomy ID: 410658] unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
Submission	Registration date: 6-Sep-2023 Sun Yat-Sen University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	202
WGS master	148
Genomic DNA	54
SRA Experiments	371
Other datasets
BioSample	510
Assembly	148

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

144
4
148

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_031180765.1	JAPSLN000000000	SAMN31836364	RH59_bin.031	Acetobacteraceae bacterium
GCA_031177105.1	JAPSGZ000000000	SAMN31830722	RS_bin.033	Acidimicrobiales bacterium
GCA_031177445.1	JAPSGP000000000	SAMN31830712	BS_bin.037	Acidimicrobiia bacterium
GCA_031177425.1	JAPSGQ000000000	SAMN31830713	BS_bin.038	Actinomycetota bacterium
GCA_031177695.1	JAPSGH000000000	SAMN31830704	BS_bin.006	Actinomycetota bacterium
GCA_031177505.1	JAPSGN000000000	SAMN31830710	BS_bin.026	Actinomycetota bacterium
GCA_031177925.1	JAPSKA000000000	SAMN31836325	RM56_bin.085	Actinotalea sp.
GCA_031178245.1	JAPSJO000000000	SAMN31836313	RM56_bin.024	Aeromicrobium sp.
GCA_031178145.1	JAPSJP000000000	SAMN31836314	RM56_bin.033	Agrococcus sp.
GCA_031178105.1	JAPSJX000000000	SAMN31836322	RM56_bin.066	Agrococcus sp.
GCA_031179215.1	JAPSIA000000000	SAMN31836273	RM44_bin.009	Agrococcus sp.
GCA_031178085.1	JAPSJR000000000	SAMN31836316	RM56_bin.044	Agromyces sp.
GCA_031178045.1	JAPSJT000000000	SAMN31836318	RM56_bin.052	Agromyces sp.
GCA_031178025.1	JAPSJU000000000	SAMN31836319	RM56_bin.059	Agromyces sp.
GCA_031178065.1	JAPSJS000000000	SAMN31836317	RM56_bin.049	Altererythrobacter sp.
GCA_031177935.1	JAPSJZ000000000	SAMN31836324	RM56_bin.079	Arthrobacter sp.
GCA_031178285.1	JAPSJH000000000	SAMN31836306	RM56_bin.007	Arthrobacter sp.
GCA_031178585.1	JAPSIT000000000	SAMN31836292	RM46_bin.004	Arthrobacter sp.
GCA_031179025.1	JAPSIM000000000	SAMN31836285	RM44_bin.067	Arthrobacter sp.
GCA_031178965.1	JAPSIH000000000	SAMN31836280	RM44_bin.035	Arthrobacter sp.
GCA_031179985.1	JAPSHJ000000000	SAMN31836256	RL56_bin.044	Arthrobacter sp.
GCA_031179385.1	JAPSHV000000000	SAMN31836268	RL58_bin.052	Arthrobacter sp.
GCA_031180225.1	JAPSHD000000000	SAMN31836250	RL56_bin.023	Arthrobacter sp.
GCA_031179665.1	JAPSHP000000000	SAMN31836262	RL58_bin.014	Bacillus anthracis
GCA_031180505.1	JAPSLS000000000	SAMN31836369	RH59_bin.044	Bacillus haynesii
GCA_031181335.1	JAPSKW000000000	SAMN31836347	RH52_bin.058	Bacillus pumilus
GCA_031181485.1	JAPSKT000000000	SAMN31836344	RH52_bin.048	Bacillus sp. (in: firmicutes)
GCA_031181745.1	JAPSKK000000000	SAMN31836335	RH52_bin.022	Bacillus sp. (in: firmicutes)
GCA_031180405.1	JAPSLU000000000	SAMN31836371	RH59_bin.048	Bacillus sp. (in: firmicutes)
GCA_031180805.1	JAPSLL000000000	SAMN31836362	RH59_bin.029	Bacillus sp. (in: firmicutes)
GCA_031179905.1	JAPSHL000000000	SAMN31836258	RL56_bin.047	Bacillus sp. (in: firmicutes)
GCA_031179815.1	JAPSHT000000000	SAMN31836266	RL58_bin.045	Bacillus sp. (in: firmicutes)
GCA_031178825.1	JAPSIK000000000	SAMN31836283	RM44_bin.051	Bacillus sp. (in: firmicutes)
GCA_031177905.1	JAPSKB000000000	SAMN31836326	RH52_bin.002	Bacillus sp. (in: firmicutes)
GCA_031177865.1	JAPSKD000000000	SAMN31836328	RH52_bin.007	Bacillus sp. (in: firmicutes)
GCA_031181005.1	JAPSLG000000000	SAMN31836357	RH59_bin.019	Brevibacillus formosus
GCA_031181775.1	JAPSKL000000000	SAMN31836336	RH52_bin.025	Brevibacillus formosus
GCA_031179165.1	JAPSIC000000000	SAMN31836275	RM44_bin.016	Brevibacterium sp.
GCA_031179145.1	JAPSIB000000000	SAMN31836274	RM44_bin.014	Brevibacterium sp.
GCA_031178465.1	JAPSIZ000000000	SAMN31836298	RM46_bin.033	Brevibacterium sp.
GCA_031178255.1	JAPSJJ000000000	SAMN31836308	RM56_bin.011	Brevibacterium sp.
GCA_031178225.1	JAPSJK000000000	SAMN31836309	RM56_bin.012	Brevibacterium sp.
GCA_031178325.1	JAPSJI000000000	SAMN31836307	RM56_bin.010	Brevundimonas sp.
GCA_031180585.1	JAPSLV000000000	SAMN31836372	RH59_bin.051	Brevundimonas sp.
GCA_031180125.1	JAPSHF000000000	SAMN31836252	RL56_bin.036	Brevundimonas sp.
GCA_031177365.1	JAPSGT000000000	SAMN31830716	RS_bin.006	Burkholderiales bacterium
GCA_031177355.1	JAPSGR000000000	SAMN31830714	RS_bin.003	Candidatus Nitrosocosmicus sp.
GCA_031178345.1	JAPSJF000000000	SAMN31836304	RM46_bin.057	Cellulomonas sp.
GCA_031178385.1	JAPSJE000000000	SAMN31836303	RM46_bin.056	Cellulomonas sp.
GCA_031178805.1	JAPSIJ000000000	SAMN31836282	RM44_bin.050	Cellulomonas sp.
GCA_031178625.1	JAPSIR000000000	SAMN31836290	RM44_bin.080	Cellulomonas sp.
GCA_031181165.1	JAPSLA000000000	SAMN31836351	RH59_bin.005	Cellulomonas sp.
GCA_031180965.1	JAPSLH000000000	SAMN31836358	RH59_bin.020	Chelativorans sp.
GCA_031177555.1	JAPSGM000000000	SAMN31830709	BS_bin.023	Chloroflexota bacterium
GCA_031177845.1	JAPSGG000000000	SAMN31830703	BS_bin.004	Chromatiales bacterium
GCA_031177075.1	JAPSHA000000000	SAMN31830723	RS_bin.039	Chromatiales bacterium
GCA_031177145.1	JAPSGX000000000	SAMN31830720	RS_bin.031	Chromatiales bacterium
GCA_031180665.1	JAPSLP000000000	SAMN31836366	RH59_bin.035	Cupriavidus sp.
GCA_031181345.1	JAPSLC000000000	SAMN31836353	RH59_bin.011	Cupriavidus sp.
GCA_031180335.1	JAPSLW000000000	SAMN31836373	RH59_bin.052	Cytobacillus oceanisediminis
GCA_031181085.1	JAPSLE000000000	SAMN31836355	RH59_bin.014	Domibacillus sp.
GCA_031177795.1	JAPSKG000000000	SAMN31836331	RH52_bin.013	Domibacillus sp.
GCA_031181385.1	JAPSKV000000000	SAMN31836346	RH52_bin.057	Fredinandcohnia onubensis
GCA_031177545.1	JAPSGL000000000	SAMN31830708	BS_bin.021	Gaiellaceae bacterium
GCA_031177535.1	JAPSGO000000000	SAMN31830711	BS_bin.030	Gaiellales bacterium
GCA_031177255.1	JAPSGV000000000	SAMN31830718	RS_bin.021	Gaiellales bacterium
GCA_031177645.1	JAPSGJ000000000	SAMN31830706	BS_bin.016	Gemmatimonadaceae bacterium
GCA_031178665.1	JAPSIO000000000	SAMN31836287	RM44_bin.073	Georgenia sp.
GCA_031181665.1	JAPSKO000000000	SAMN31836339	RH52_bin.041	Isoptericola sp.
GCA_031181105.1	JAPSLD000000000	SAMN31836354	RH59_bin.012	Isoptericola sp.
GCA_031181205.1	JAPSKY000000000	SAMN31836349	RH52_bin.068	Isoptericola sp.
GCA_031180595.1	JAPSLQ000000000	SAMN31836367	RH59_bin.036	Isoptericola sp.
GCA_031180065.1	JAPSHG000000000	SAMN31836253	RL56_bin.039	Kocuria rosea
GCA_031178865.1	JAPSII000000000	SAMN31836281	RM44_bin.046	Kocuria sp.
GCA_031179495.1	JAPSHS000000000	SAMN31836265	RL58_bin.033	Kocuria sp.
GCA_031179725.1	JAPSHO000000000	SAMN31836261	RL58_bin.009	Kocuria sp.
GCA_031178185.1	JAPSJM000000000	SAMN31836311	RM56_bin.014	Kocuria sp.
GCA_031178565.1	JAPSIU000000000	SAMN31836293	RM46_bin.006	Leucobacter sp.
GCA_031177885.1	JAPSKC000000000	SAMN31836327	RH52_bin.003	Lysinibacillus sp.
GCA_031181585.1	JAPSKP000000000	SAMN31836340	RH52_bin.043	Lysinibacillus sp.
GCA_031181725.1	JAPSKM000000000	SAMN31836337	RH52_bin.032	Mesobacillus foraminis
GCA_031177985.1	JAPSJW000000000	SAMN31836321	RM56_bin.064	Microbacteriaceae bacterium
GCA_031178475.1	JAPSIX000000000	SAMN31836296	RM46_bin.026	Microbacterium sp.
GCA_031177785.1	JAPSKF000000000	SAMN31836330	RH52_bin.010	Microbacterium sp.
GCA_031177765.1	JAPSKH000000000	SAMN31836332	RH52_bin.014	Microbacterium sp.
GCA_031178705.1	JAPSIN000000000	SAMN31836286	RM44_bin.069	Microbacterium sp.
GCA_031178445.1	JAPSIY000000000	SAMN31836297	RM46_bin.030	Microbacterium sp.
GCA_031178525.1	JAPSJA000000000	SAMN31836299	RM46_bin.041	Microbacterium sp.
GCA_031182025.1	JAPSKI000000000	SAMN31836333	RH52_bin.016	Microbacterium sp.
GCA_031179325.1	JAPSHW000000000	SAMN31836269	RL58_bin.057	Microbacterium sp.
GCA_031179745.1	JAPSHN000000000	SAMN31836260	RL56_bin.055	Microbacterium sp.
GCA_031179535.1	JAPSHU000000000	SAMN31836267	RL58_bin.046	Microbacterium sp.
GCA_031179125.1	JAPSID000000000	SAMN31836276	RM44_bin.018	Microbacterium sp.
GCA_031179295.1	JAPSHZ000000000	SAMN31836272	RM44_bin.005	Microbacterium sp.
GCA_031179285.1	JAPSHY000000000	SAMN31836271	RM44_bin.004	Microbacterium sp.
GCA_031180015.1	JAPSHH000000000	SAMN31836254	RL56_bin.040	Microbacterium sp.
GCA_031180975.1	JAPSLI000000000	SAMN31836359	RH59_bin.022	Microbacterium sp.
GCA_031181095.1	JAPSLJ000000000	SAMN31836360	RH59_bin.025	Microvirga pakistanensis
GCA_031181145.1	JAPSLB000000000	SAMN31836352	RH59_bin.009	Microvirga sp.
GCA_031181445.1	JAPSKR000000000	SAMN31836342	RH52_bin.045	Microvirga sp.
GCA_031177135.1	JAPSGY000000000	SAMN31830721	RS_bin.032	Nitrososphaeraceae archaeon
GCA_031177345.1	JAPSGS000000000	SAMN31830715	RS_bin.004	Nitrospirales bacterium
GCA_031177735.1	JAPSKJ000000000	SAMN31836334	RH52_bin.019	Nocardioides sp.
GCA_031181495.1	JAPSKS000000000	SAMN31836343	RH52_bin.046	Nocardioides sp.
GCA_031178975.1	JAPSIF000000000	SAMN31836278	RM44_bin.032	Nocardioides sp.
GCA_031178395.1	JAPSJD000000000	SAMN31836302	RM46_bin.052	Paenarthrobacter sp.
GCA_031179305.1	JAPSHX000000000	SAMN31836270	RL58_bin.064	Paenarthrobacter sp.
GCA_031180005.1	JAPSHI000000000	SAMN31836255	RL56_bin.043	Paenarthrobacter sp.
GCA_031181065.1	JAPSLF000000000	SAMN31836356	RH59_bin.016	Paenibacillus sp.
GCA_031180825.1	JAPSLM000000000	SAMN31836363	RH59_bin.030	Paenibacillus sp.
GCA_031181325.1	JAPSKX000000000	SAMN31836348	RH52_bin.063	Paenibacillus sp.
GCA_031177825.1	JAPSKE000000000	SAMN31836329	RH52_bin.008	Paenibacillus sp.
GCA_031178645.1	JAPSIP000000000	SAMN31836288	RM44_bin.074	Paracoccus sp. (in: a-proteobacteria)
GCA_031179845.1	JAPSHM000000000	SAMN31836259	RL56_bin.054	Pedobacter sp.
GCA_031179945.1	JAPSHK000000000	SAMN31836257	RL56_bin.045	Peribacillus frigoritolerans
GCA_031179525.1	JAPSHR000000000	SAMN31836264	RL58_bin.028	Peribacillus frigoritolerans
GCA_031178845.1	JAPSIL000000000	SAMN31836284	RM44_bin.060	Peribacillus frigoritolerans
GCA_031181185.1	JAPSKZ000000000	SAMN31836350	RH59_bin.004	Phenylobacterium sp.
GCA_031178005.1	JAPSJV000000000	SAMN31836320	RM56_bin.062	Pseudarthrobacter sp.
GCA_031180145.1	JAPSHE000000000	SAMN31836251	RL56_bin.032	Pseudarthrobacter sp.
GCA_031180205.1	JAPSHC000000000	SAMN31836249	RL56_bin.011	Pseudarthrobacter sp.
GCA_031180725.1	JAPSLO000000000	SAMN31836365	RH59_bin.032	Roseomonas sp.
GCA_031177185.1	JAPSGW000000000	SAMN31830719	RS_bin.030	Rubrobacteraceae bacterium
GCA_031180535.1	JAPSLR000000000	SAMN31836368	RH59_bin.043	Saccharomonospora sp.
GCA_031180465.1	JAPSLT000000000	SAMN31836370	RH59_bin.045	Saccharothrix sp.
GCA_031180885.1	JAPSLK000000000	SAMN31836361	RH59_bin.028	Saccharothrix sp.
GCA_031178945.1	JAPSIG000000000	SAMN31836279	RM44_bin.034	Sinorhizobium meliloti
GCA_031178125.1	JAPSJQ000000000	SAMN31836315	RM56_bin.042	Sinorhizobium meliloti
GCA_031178595.1	JAPSIS000000000	SAMN31836291	RM46_bin.003	Sinorhizobium meliloti
GCA_031178305.1	JAPSJG000000000	SAMN31836305	RM56_bin.004	Sinorhizobium sp.
GCA_031177965.1	JAPSJY000000000	SAMN31836323	RM56_bin.073	Sinorhizobium sp.
GCA_031177685.1	JAPSGI000000000	SAMN31830705	BS_bin.015	Solirubrobacteraceae bacterium
GCA_031178165.1	JAPSJN000000000	SAMN31836312	RM56_bin.016	Sphingomonas sp.
GCA_031178535.1	JAPSIV000000000	SAMN31836294	RM46_bin.007	Streptomyces alfalfae
GCA_031181405.1	JAPSKU000000000	SAMN31836345	RH52_bin.054	Streptomyces calvus
GCA_031181705.1	JAPSKN000000000	SAMN31836338	RH52_bin.036	Streptomyces sp.
GCA_031181555.1	JAPSKQ000000000	SAMN31836341	RH52_bin.044	Streptomyces sp.
GCA_031180325.1	JAPSLX000000000	SAMN31836374	RH59_bin.053	Streptomyces sp.
GCA_031178655.1	JAPSIQ000000000	SAMN31836289	RM44_bin.079	Streptomyces sp.
GCA_031178505.1	JAPSIW000000000	SAMN31836295	RM46_bin.015	Streptomyces sp.
GCA_031177285.1	JAPSGU000000000	SAMN31830717	RS_bin.016	Thermoanaerobaculia bacterium
GCA_031177615.1	JAPSGK000000000	SAMN31830707	BS_bin.017	Thermoleophilaceae bacterium
GCA_031178355.1	JAPSJC000000000	SAMN31836301	RM46_bin.044	Ureibacillus sp.
GCA_031180215.1	JAPSHB000000000	SAMN31836248	RL56_bin.009	Zhihengliuella sp.
GCA_031179065.1	JAPSIE000000000	SAMN31836277	RM44_bin.022	Zhihengliuella sp.
GCA_031179775.1	JAPSHQ000000000	SAMN31836263	RL58_bin.017	Zhihengliuella sp.
GCA_031178195.1	JAPSJL000000000	SAMN31836310	RM56_bin.013	Zhihengliuella sp.
GCA_031178425.1	JAPSJB000000000	SAMN31836300	RM46_bin.043	Zhihengliuella sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	314
Data volume, Mbytes	98401

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soil metagenome

Desert soil microbiota culturomics

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