ID 892869 - BioProject

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Accession: PRJEB56857 ID: 892869

EMG produced TPA metagenomics assembly of PRJNA741688 data set (saliva metagenomic analysis of Crohn`s disease-related periodontitis).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA741688, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56857
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 21-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8049
WGS master	97
Publications
PubMed	1
PMC	1
Other datasets
BioSample	97
Assembly	97

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

97
97

Assembly	WGS	BioSample	Taxonomy
GCA_963537725.1	CAUTFD000000000	SAMEA114448026	Abiotrophia defectiva
GCA_963538275.1	CAUTJE000000000	SAMEA114447968	Actinomyces dentalis
GCA_963538375.1	CAUTIG000000000	SAMEA114447992	Actinomyces graevenitzii
GCA_963538415.1	CAUTJH000000000	SAMEA114447994	Actinomyces oris
GCA_963536125.1	CAUSZW000000000	SAMEA114448031	Actinomyces oris
GCA_963537045.1	CAUTCU000000000	SAMEA114448010	Aggregatibacter segnis
GCA_963539425.1	CAUTMG000000000	SAMEA114447980	Alloprevotella tannerae
GCA_963536155.1	CAUSZE000000000	SAMEA114448014	Capnocytophaga gingivalis
GCA_963537465.1	CAUTEC000000000	SAMEA114448019	Capnocytophaga sputigena
GCA_963535685.1	CAUSYB000000000	SAMEA114448006	Cardiobacterium hominis
GCA_963535875.1	CAUSYL000000000	SAMEA114447978	Corynebacterium matruchotii
GCA_963538515.1	CAUTIU000000000	SAMEA114447972	Dialister invisus
GCA_963537885.1	CAUTFU000000000	SAMEA114448011	Eikenella corrodens
GCA_963538795.1	CAUTJQ000000000	SAMEA114447950	Fusobacterium massiliense
GCA_963538105.1	CAUTGH000000000	SAMEA114448036	Gemella haemolysans
GCA_963536805.1	CAUTBG000000000	SAMEA114448007	Gemella morbillorum
GCA_963539295.1	CAUTLX000000000	SAMEA114447995	Haemophilus haemolyticus
GCA_963536685.1	CAUTAV000000000	SAMEA114448039	Haemophilus haemolyticus
GCA_963536075.1	CAUSZT000000000	SAMEA114448037	Haemophilus parahaemolyticus
GCA_963539135.1	CAUTLC000000000	SAMEA114447948	Haemophilus parahaemolyticus
GCA_963535195.1	CAUSVP000000000	SAMEA114448024	Haemophilus parainfluenzae
GCA_963536035.1	CAUSYV000000000	SAMEA114448021	Hoylesella nanceiensis
GCA_963538885.1	CAUTJZ000000000	SAMEA114447962	Lautropia mirabilis
GCA_963538325.1	CAUTIT000000000	SAMEA114448029	Leptotrichia wadei
GCA_963536985.1	CAUTDJ000000000	SAMEA114448013	Metamycoplasma salivarium
GCA_963536785.1	CAUTBQ000000000	SAMEA114447951	Neisseria cinerea
GCA_963536215.1	CAUSZR000000000	SAMEA114448009	Neisseria elongata
GCA_963539405.1	CAUTMF000000000	SAMEA114447970	Porphyromonas endodontalis
GCA_963539325.1	CAUTLU000000000	SAMEA114447991	Porphyromonas gingivalis
GCA_963537485.1	CAUTDY000000000	SAMEA114448002	Prevotella intermedia
GCA_963535125.1	CAUSVU000000000	SAMEA114447965	Prevotella multiformis
GCA_963539285.1	CAUTMC000000000	SAMEA114447986	Prevotella pallens
GCA_963536975.1	CAUTED000000000	SAMEA114447949	Rothia aeria
GCA_963536675.1	CAUTBV000000000	SAMEA114448000	Rothia dentocariosa
GCA_963537035.1	CAUTCO000000000	SAMEA114448022	Rothia mucilaginosa
GCA_963535995.1	CAUSZU000000000	SAMEA114448038	Rothia mucilaginosa
GCA_963535695.1	CAUSXT000000000	SAMEA114447993	Rothia mucilaginosa
GCA_963534785.1	CAUSUK000000000	SAMEA114448001	Rothia mucilaginosa
GCA_963538925.1	CAUTLG000000000	SAMEA114447960	Schaalia odontolytica
GCA_963538595.1	CAUTIY000000000	SAMEA114447984	Segatella maculosa
GCA_963538935.1	CAUTLD000000000	SAMEA114447964	Segatella oulorum
GCA_963535675.1	CAUSXR000000000	SAMEA114447988	Selenomonas flueggei
GCA_963537605.1	CAUTGD000000000	SAMEA114448030	Selenomonas noxia
GCA_963535735.1	CAUSXQ000000000	SAMEA114448004	Streptococcus mitis
GCA_963538655.1	CAUTIO000000000	SAMEA114447997	Streptococcus mitis
GCA_963537665.1	CAUTEY000000000	SAMEA114448018	Streptococcus sanguinis
GCA_963536575.1	CAUTCF000000000	SAMEA114447981	Treponema socranskii
GCA_963538115.1	CAUTHA000000000	SAMEA114448034	Veillonella parvula
GCA_963535335.1	CAUSWY000000000	SAMEA114447973	uncultured Actinomyces sp.
GCA_963538365.1	CAUTIH000000000	SAMEA114447987	uncultured Actinomyces sp.
GCA_963537735.1	CAUTGT000000000	SAMEA114448025	uncultured Actinomycetaceae bacterium
GCA_963535385.1	CAUSWR000000000	SAMEA114448003	uncultured Aggregatibacter sp.
GCA_963538485.1	CAUTHQ000000000	SAMEA114447955	uncultured Alloprevotella sp.
GCA_963539005.1	CAUTLE000000000	SAMEA114448040	uncultured Bergeyella sp.
GCA_963535265.1	CAUSWS000000000	SAMEA114447989	uncultured Campylobacter sp.
GCA_963538815.1	CAUTJK000000000	SAMEA114447947	uncultured Candidatus Saccharibacteria bacterium
GCA_963538165.1	CAUTHG000000000	SAMEA114447975	uncultured Candidatus Saccharibacteria bacterium
GCA_963535375.1	CAUSVT000000000	SAMEA114448015	uncultured Candidatus Saccharibacteria bacterium
GCA_963535625.1	CAUSXG000000000	SAMEA114447985	uncultured Candidatus Saccharibacteria bacterium
GCA_963535655.1	CAUSXD000000000	SAMEA114447983	uncultured Candidatus Saccharibacteria bacterium
GCA_963537435.1	CAUTDE000000000	SAMEA114447963	uncultured Candidatus Saccharibacteria bacterium
GCA_963539275.1	CAUTLL000000000	SAMEA114447958	uncultured Flavobacteriaceae bacterium
GCA_963538255.1	CAUTIJ000000000	SAMEA114448035	uncultured Flavobacteriaceae bacterium
GCA_963537515.1	CAUTEN000000000	SAMEA114447966	uncultured Fusobacterium sp.
GCA_963535095.1	CAUSUW000000000	SAMEA114447996	uncultured Gemella sp.
GCA_963536435.1	CAUTBA000000000	SAMEA114447959	uncultured Granulicatella sp.
GCA_963536005.1	CAUSZH000000000	SAMEA114448027	uncultured Granulicatella sp.
GCA_963535215.1	CAUSWE000000000	SAMEA114447952	uncultured Granulicatella sp.
GCA_963535285.1	CAUSWW000000000	SAMEA114447999	uncultured Haemophilus sp.
GCA_963539045.1	CAUTJY000000000	SAMEA114447945	uncultured Lachnoanaerobaculum sp.
GCA_963536795.1	CAUTCI000000000	SAMEA114447971	uncultured Lachnospiraceae bacterium
GCA_963535325.1	CAUSWH000000000	SAMEA114447976	uncultured Lachnospiraceae bacterium
GCA_963535255.1	CAUSWJ000000000	SAMEA114448012	uncultured Leptotrichiaceae bacterium
GCA_963539375.1	CAUTLT000000000	SAMEA114447969	uncultured Mitsuokella sp.
GCA_963536945.1	CAUTCP000000000	SAMEA114448020	uncultured Neisseria sp.
GCA_963535405.1	CAUSWU000000000	SAMEA114447998	uncultured Neisseria sp.
GCA_963538335.1	CAUTIX000000000	SAMEA114447982	uncultured Olsenella sp.
GCA_963538575.1	CAUTJA000000000	SAMEA114448008	uncultured Ottowia sp.
GCA_963535865.1	CAUSYM000000000	SAMEA114447961	uncultured Porphyromonadaceae bacterium
GCA_963539355.1	CAUTLV000000000	SAMEA114447979	uncultured Porphyromonadaceae bacterium
GCA_963535485.1	CAUSXV000000000	SAMEA114447977	uncultured Porphyromonas sp.
GCA_963539225.1	CAUTJS000000000	SAMEA114447956	uncultured Prevotella sp.
GCA_963536545.1	CAUTCK000000000	SAMEA114448041	uncultured Prevotella sp.
GCA_963538905.1	CAUTKB000000000	SAMEA114447967	uncultured Prevotella sp.
GCA_963539365.1	CAUTMA000000000	SAMEA114447990	uncultured Prevotella sp.
GCA_963538445.1	CAUTJF000000000	SAMEA114448033	uncultured Prevotella sp.
GCA_963537075.1	CAUTDZ000000000	SAMEA114448023	uncultured Prevotellaceae bacterium
GCA_963537405.1	CAUTDL000000000	SAMEA114447953	uncultured Prevotellaceae bacterium
GCA_963535135.1	CAUSVS000000000	SAMEA114448005	uncultured Propionibacteriaceae bacterium
GCA_963535105.1	CAUSUS000000000	SAMEA114447944	uncultured Streptobacillus sp.
GCA_963539215.1	CAUTJT000000000	SAMEA114447954	uncultured Streptobacillus sp.
GCA_963536275.1	CAUSZC000000000	SAMEA114448028	uncultured Streptococcus sp.
GCA_963539035.1	CAUTLN000000000	SAMEA114448032	uncultured Tannerella sp.
GCA_963536995.1	CAUTCR000000000	SAMEA114447957	uncultured Veillonella sp.
GCA_963536965.1	CAUTCQ000000000	SAMEA114447946	uncultured Veillonella sp.
GCA_963535415.1	CAUSVV000000000	SAMEA114448017	uncultured bacterium
GCA_963535495.1	CAUSXB000000000	SAMEA114447974	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA741688 data set (saliva metagenomic analysis of Crohn`s disease-related periodontitis).

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