ID 893331 - BioProject

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Accession: PRJEB56901 ID: 893331

EMG produced TPA metagenomics assembly of PRJDB10606 data set (Shotgun metagenome sequencing of saliva microbiome of MRONJ patients using HiSeq).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJDB10606, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56901
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 23-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14991
WGS master	171
Publications
PubMed	1
PMC	1
Other datasets
BioSample	171
Assembly	171

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

171
171

Assembly	WGS	BioSample	Taxonomy
GCA_963536815.1	CAUTAT000000000	SAMEA114447694	Abiotrophia defectiva
GCA_963535435.1	CAUSVX000000000	SAMEA114447695	Actinomyces graevenitzii
GCA_963537495.1	CAUTDK000000000	SAMEA114447646	Actinomyces graevenitzii
GCA_963534805.1	CAUSVM000000000	SAMEA114447643	Actinomyces israelii
GCA_963537285.1	CAUTEK000000000	SAMEA114447711	Actinomyces johnsonii
GCA_963536595.1	CAUTBR000000000	SAMEA114447710	Actinomyces oris
GCA_963538855.1	CAUTKT000000000	SAMEA114447737	Actinomyces oris
GCA_963534975.1	CAUSVG000000000	SAMEA114447777	Actinomyces radicidentis
GCA_963537145.1	CAUTDV000000000	SAMEA114447680	Alloprevotella tannerae
GCA_963539385.1	CAUTLW000000000	SAMEA114447665	Anaeroglobus geminatus
GCA_963537365.1	CAUTEW000000000	SAMEA114447723	Arachnia propionica
GCA_963534445.1	CAUSTA000000000	SAMEA114447652	Bifidobacterium dentium
GCA_963534505.1	CAUSTB000000000	SAMEA114447708	Bifidobacterium longum
GCA_963536375.1	CAUTAY000000000	SAMEA114447780	Bilophila wadsworthia
GCA_963535505.1	CAUSXK000000000	SAMEA114447704	Bulleidia extructa
GCA_963534705.1	CAUSUF000000000	SAMEA114447763	Capnocytophaga leadbetteri
GCA_963534795.1	CAUSVK000000000	SAMEA114447774	Christensenella hongkongensis
GCA_963535515.1	CAUSXA000000000	SAMEA114447624	Corynebacterium argentoratense
GCA_963535275.1	CAUSWC000000000	SAMEA114447700	Corynebacterium durum
GCA_963538025.1	CAUTFQ000000000	SAMEA114447753	Corynebacterium durum
GCA_963536335.1	CAUTBJ000000000	SAMEA114447693	Corynebacterium matruchotii
GCA_963534845.1	CAUSUI000000000	SAMEA114447648	Cryptobacterium curtum
GCA_963537155.1	CAUTEQ000000000	SAMEA114447674	Desulfobulbus oralis
GCA_963536885.1	CAUTCC000000000	SAMEA114447673	Filifactor alocis
GCA_963539055.1	CAUTKR000000000	SAMEA114447746	Fusobacterium periodonticum
GCA_963538825.1	CAUTJN000000000	SAMEA114447741	Gardnerella vaginalis
GCA_963536695.1	CAUTAO000000000	SAMEA114447712	Gemella sanguinis
GCA_963536775.1	CAUTBT000000000	SAMEA114447671	Haemophilus parainfluenzae
GCA_963537255.1	CAUTDH000000000	SAMEA114447758	Haemophilus parainfluenzae
GCA_963536225.1	CAUTAA000000000	SAMEA114447676	Lachnoanaerobaculum gingivalis
GCA_963536665.1	CAUTBD000000000	SAMEA114447776	Lacticaseibacillus paracasei
GCA_963534665.1	CAUSTF000000000	SAMEA114447772	Lactiplantibacillus plantarum
GCA_963534545.1	CAUSTK000000000	SAMEA114447743	Lactobacillus crispatus
GCA_963535205.1	CAUSVR000000000	SAMEA114447730	Lactobacillus gasseri
GCA_963539095.1	CAUTKI000000000	SAMEA114447740	Lancefieldella parvula
GCA_963536745.1	CAUTBI000000000	SAMEA114447663	Lancefieldella rimae
GCA_963539195.1	CAUTLP000000000	SAMEA114447642	Lautropia mirabilis
GCA_963534875.1	CAUSUJ000000000	SAMEA114447775	Levilactobacillus brevis
GCA_963538765.1	CAUTJL000000000	SAMEA114447727	Ligilactobacillus salivarius
GCA_963538525.1	CAUTIP000000000	SAMEA114447781	Limosilactobacillus fermentum
GCA_963537525.1	CAUTER000000000	SAMEA114447736	Limosilactobacillus oris
GCA_963537535.1	CAUTEV000000000	SAMEA114447666	Megasphaera micronuciformis
GCA_963535825.1	CAUSXO000000000	SAMEA114447778	Microbacterium aurum
GCA_963537165.1	CAUTEE000000000	SAMEA114447669	Mogibacterium diversum
GCA_963535475.1	CAUSVY000000000	SAMEA114447682	Mogibacterium diversum
GCA_963536525.1	CAUTAN000000000	SAMEA114447677	Mogibacterium timidum
GCA_963538775.1	CAUTKO000000000	SAMEA114447632	Neisseria elongata
GCA_963534495.1	CAUSTC000000000	SAMEA114447644	Olsenella profusa
GCA_963536715.1	CAUTBM000000000	SAMEA114447681	Olsenella uli
GCA_963534995.1	CAUSUX000000000	SAMEA114447757	Oribacterium parvum
GCA_963537275.1	CAUTDB000000000	SAMEA114447732	Parascardovia denticolens
GCA_963536325.1	CAUTAE000000000	SAMEA114447685	Parvimonas micra
GCA_963535175.1	CAUSWK000000000	SAMEA114447697	Peptostreptococcus stomatis
GCA_963534605.1	CAUSTO000000000	SAMEA114447655	Porphyromonas catoniae
GCA_963537135.1	CAUTDT000000000	SAMEA114447658	Porphyromonas gingivalis
GCA_963539315.1	CAUTMH000000000	SAMEA114447619	Prevotella conceptionensis
GCA_963538735.1	CAUTKA000000000	SAMEA114447699	Prevotella denticola
GCA_963537095.1	CAUTEH000000000	SAMEA114447649	Prevotella histicola
GCA_963535225.1	CAUSWP000000000	SAMEA114447703	Prevotella intermedia
GCA_963538045.1	CAUTGU000000000	SAMEA114447755	Prevotella jejuni
GCA_963536465.1	CAUTCL000000000	SAMEA114447675	Prevotella melaninogenica
GCA_963539395.1	CAUTMB000000000	SAMEA114447615	Prevotella nigrescens
GCA_963537565.1	CAUTFH000000000	SAMEA114447751	Prevotella pallens
GCA_963534525.1	CAUSTH000000000	SAMEA114447707	Prevotella veroralis
GCA_963535705.1	CAUSYI000000000	SAMEA114447768	Propionibacterium acidifaciens
GCA_963536475.1	CAUTCM000000000	SAMEA114447688	Pseudomonas aeruginosa
GCA_963534815.1	CAUSUP000000000	SAMEA114447645	Pseudoramibacter alactolyticus
GCA_963537505.1	CAUTDR000000000	SAMEA114447750	Rothia aeria
GCA_963537315.1	CAUTDP000000000	SAMEA114447735	Rothia dentocariosa
GCA_963536535.1	CAUTAM000000000	SAMEA114447717	Rothia mucilaginosa
GCA_963537235.1	CAUTCW000000000	SAMEA114447744	Rothia mucilaginosa
GCA_963539125.1	CAUTKL000000000	SAMEA114447612	Rothia mucilaginosa
GCA_963534775.1	CAUSUH000000000	SAMEA114447767	Rothia mucilaginosa
GCA_963534925.1	CAUSUM000000000	SAMEA114447773	Scardovia wiggsiae
GCA_963537355.1	CAUTEO000000000	SAMEA114447705	Schaalia cardiffensis
GCA_963535575.1	CAUSXH000000000	SAMEA114447618	Schaalia odontolytica
GCA_963534425.1	CAUSSY000000000	SAMEA114447651	Segatella oris
GCA_963538915.1	CAUTLA000000000	SAMEA114447718	Segatella salivae
GCA_963535545.1	CAUSXS000000000	SAMEA114447659	Shuttleworthella satelles
GCA_963535765.1	CAUSXX000000000	SAMEA114447627	Slackia exigua
GCA_963535945.1	CAUSZP000000000	SAMEA114447678	Solobacterium moorei
GCA_963536845.1	CAUTCN000000000	SAMEA114447662	Sphingobium yanoikuyae
GCA_963536425.1	CAUTBL000000000	SAMEA114447771	Staphylococcus epidermidis
GCA_963535755.1	CAUSYG000000000	SAMEA114447653	Stenotrophomonas maltophilia
GCA_963538005.1	CAUTFV000000000	SAMEA114447766	Stomatobaculum longum
GCA_963536365.1	CAUTAZ000000000	SAMEA114447613	Stomatobaculum longum
GCA_963536555.1	CAUTBB000000000	SAMEA114447725	Streptococcus anginosus
GCA_963534695.1	CAUSTZ000000000	SAMEA114447633	Streptococcus anginosus
GCA_963536565.1	CAUTAL000000000	SAMEA114447690	Streptococcus constellatus
GCA_963539235.1	CAUTKP000000000	SAMEA114447734	Streptococcus intermedius
GCA_963537305.1	CAUTDD000000000	SAMEA114447728	Streptococcus mutans
GCA_963534755.1	CAUSUC000000000	SAMEA114447769	Streptococcus salivarius
GCA_963537015.1	CAUTCV000000000	SAMEA114447731	Streptococcus sobrinus
GCA_963534475.1	CAUSSZ000000000	SAMEA114447721	Trueperella pyogenes
GCA_963536925.1	CAUTDW000000000	SAMEA114447733	Veillonella parvula
GCA_963536735.1	CAUTAW000000000	SAMEA114447687	[Eubacterium] brachy
GCA_963535855.1	CAUSYD000000000	SAMEA114447660	[Eubacterium] nodatum
GCA_963539115.1	CAUTKV000000000	SAMEA114447747	[Eubacterium] sulci
GCA_963539175.1	CAUTLB000000000	SAMEA114447729	[Lactobacillus] timonensis
GCA_963535745.1	CAUSYF000000000	SAMEA114447628	[Pseudopropionibacterium] massiliense
GCA_963535315.1	CAUSWG000000000	SAMEA114447702	uncultured Actinobaculum sp.
GCA_963536345.1	CAUTAH000000000	SAMEA114447684	uncultured Actinomyces sp.
GCA_963535245.1	CAUSWO000000000	SAMEA114447686	uncultured Actinomyces sp.
GCA_963535365.1	CAUSWI000000000	SAMEA114447706	uncultured Actinomyces sp.
GCA_963538745.1	CAUTKD000000000	SAMEA114447714	uncultured Actinomyces sp.
GCA_963535595.1	CAUSXN000000000	SAMEA114447630	uncultured Actinomyces sp.
GCA_963536355.1	CAUTAU000000000	SAMEA114447617	uncultured Actinomyces sp.
GCA_963537345.1	CAUTET000000000	SAMEA114447719	uncultured Actinomyces sp.
GCA_963537295.1	CAUTEX000000000	SAMEA114447637	uncultured Actinomyces sp.
GCA_963537025.1	CAUTEM000000000	SAMEA114447672	uncultured Actinomyces sp.
GCA_963536765.1	CAUTCJ000000000	SAMEA114447764	uncultured Actinomycetaceae bacterium
GCA_963535975.1	CAUSYY000000000	SAMEA114447696	uncultured Actinomycetaceae bacterium
GCA_963537175.1	CAUTDS000000000	SAMEA114447668	uncultured Actinomycetes bacterium
GCA_963535845.1	CAUSYJ000000000	SAMEA114447616	uncultured Alloprevotella sp.
GCA_963539445.1	CAUTMD000000000	SAMEA114447641	uncultured Atopobiaceae bacterium
GCA_963537995.1	CAUTFP000000000	SAMEA114447754	uncultured Atopobium sp.
GCA_963535055.1	CAUSUU000000000	SAMEA114447782	uncultured Candidatus Saccharibacteria bacterium
GCA_963534825.1	CAUSUR000000000	SAMEA114447779	uncultured Candidatus Saccharibacteria bacterium
GCA_963539335.1	CAUTLQ000000000	SAMEA114447634	uncultured Candidatus Saccharibacteria bacterium
GCA_963539345.1	CAUTLS000000000	SAMEA114447623	uncultured Candidatus Saccharibacteria bacterium
GCA_963537225.1	CAUTCS000000000	SAMEA114447759	uncultured Candidatus Saccharibacteria bacterium
GCA_963539155.1	CAUTJX000000000	SAMEA114447635	uncultured Candidatus Saccharibacteria bacterium
GCA_963536505.1	CAUTBZ000000000	SAMEA114447667	uncultured Fretibacterium sp.
GCA_963536855.1	CAUTCA000000000	SAMEA114447654	uncultured Fusobacterium sp.
GCA_963537375.1	CAUTDQ000000000	SAMEA114447742	uncultured Gemella sp.
GCA_963536605.1	CAUTAS000000000	SAMEA114447698	uncultured Haemophilus sp.
GCA_963535025.1	CAUSVE000000000	SAMEA114447638	uncultured Hyphomicrobiales bacterium
GCA_963538945.1	CAUTKH000000000	SAMEA114447716	uncultured Johnsonella sp.
GCA_963537455.1	CAUTDU000000000	SAMEA114447760	uncultured Lachnoanaerobaculum sp.
GCA_963534535.1	CAUSTQ000000000	SAMEA114447713	uncultured Lachnoanaerobaculum sp.
GCA_963538865.1	CAUTJV000000000	SAMEA114447647	uncultured Lachnospiraceae bacterium
GCA_963538985.1	CAUTKE000000000	SAMEA114447726	uncultured Lachnospiraceae bacterium
GCA_963537215.1	CAUTES000000000	SAMEA114447650	uncultured Lachnospiraceae bacterium
GCA_963535455.1	CAUSWZ000000000	SAMEA114447692	uncultured Leptotrichia sp.
GCA_963538095.1	CAUTGZ000000000	SAMEA114447739	uncultured Micrococcales bacterium
GCA_963534905.1	CAUSUY000000000	SAMEA114447639	uncultured Neisseria sp.
GCA_963539435.1	CAUTLR000000000	SAMEA114447679	uncultured Neisseria sp.
GCA_963538725.1	CAUTKQ000000000	SAMEA114447701	uncultured Neisseria sp.
GCA_963537385.1	CAUTEP000000000	SAMEA114447636	uncultured Neisseria sp.
GCA_963534555.1	CAUSTU000000000	SAMEA114447657	uncultured Neisseriaceae bacterium
GCA_963534405.1	CAUSSW000000000	SAMEA114447620	uncultured Olsenella sp.
GCA_963539415.1	CAUTME000000000	SAMEA114447670	uncultured Olsenella sp.
GCA_963534515.1	CAUSTN000000000	SAMEA114447661	uncultured Oribacterium sp.
GCA_963534765.1	CAUSUG000000000	SAMEA114447626	uncultured Oribacterium sp.
GCA_963537185.1	CAUTEL000000000	SAMEA114447664	uncultured Oribacterium sp.
GCA_963538705.1	CAUTKG000000000	SAMEA114447621	uncultured Oribacterium sp.
GCA_963534565.1	CAUSTJ000000000	SAMEA114447762	uncultured Parvimonas sp.
GCA_963534465.1	CAUSTE000000000	SAMEA114447622	uncultured Peptococcaceae bacterium
GCA_963537005.1	CAUTCX000000000	SAMEA114447745	uncultured Peptostreptococcus sp.
GCA_963537085.1	CAUTCZ000000000	SAMEA114447756	uncultured Porphyromonadaceae bacterium
GCA_963539455.1	CAUTLZ000000000	SAMEA114447625	uncultured Porphyromonas sp.
GCA_963539145.1	CAUTKS000000000	SAMEA114447724	uncultured Prevotella sp.
GCA_963538755.1	CAUTJP000000000	SAMEA114447748	uncultured Prevotellaceae bacterium
GCA_963535635.1	CAUSXL000000000	SAMEA114447629	uncultured Prevotellaceae bacterium
GCA_963534725.1	CAUSUA000000000	SAMEA114447631	uncultured Prevotellaceae bacterium
GCA_963534645.1	CAUSTS000000000	SAMEA114447656	uncultured Propionibacteriaceae bacterium
GCA_963534965.1	CAUSVA000000000	SAMEA114447770	uncultured Rothia sp.
GCA_963537115.1	CAUTDO000000000	SAMEA114447722	uncultured Solobacterium sp.
GCA_963537055.1	CAUTCT000000000	SAMEA114447752	uncultured Solobacterium sp.
GCA_963537265.1	CAUTDX000000000	SAMEA114447640	uncultured Stomatobaculum sp.
GCA_963538965.1	CAUTKM000000000	SAMEA114447720	uncultured Streptococcus sp.
GCA_963534675.1	CAUSTX000000000	SAMEA114447715	uncultured Streptococcus sp.
GCA_963535345.1	CAUSWL000000000	SAMEA114447738	uncultured Streptococcus sp.
GCA_963536705.1	CAUTAP000000000	SAMEA114447683	uncultured Streptococcus sp.
GCA_963535885.1	CAUSYR000000000	SAMEA114447689	uncultured Streptococcus sp.
GCA_963535795.1	CAUSYA000000000	SAMEA114447614	uncultured Streptococcus sp.
GCA_963538785.1	CAUTKF000000000	SAMEA114447709	uncultured Streptococcus sp.
GCA_963539065.1	CAUTKK000000000	SAMEA114447749	uncultured Streptococcus sp.
GCA_963538205.1	CAUTIL000000000	SAMEA114447765	uncultured Veillonella sp.
GCA_963534655.1	CAUSTI000000000	SAMEA114447761	uncultured Veillonella sp.
GCA_963536245.1	CAUSZK000000000	SAMEA114447691	uncultured Veillonella sp.

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EMG produced TPA metagenomics assembly of PRJDB10606 data set (Shotgun metagenome sequencing of saliva microbiome of MRONJ patients using HiSeq).

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