ID 894995 - BioProject

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Accession: PRJNA894995 ID: 894995

Detection of extended-spectrum beta-lactamase producers in the Klebsiella oxytoca complex

A collection of K. oxytoca complex strains was evaluated using various phenotypic assays to distinguish ESBL producers from OXY hyperproducers. Strains were also characterized using Illumina whole genome sequencing.

Accession	PRJNA894995
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Campos-Madueno EI et al., "Evaluation of Phenotypic Tests to Detect Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella oxytoca Complex Strains.", J Clin Microbiol, 2023 Apr 20;61(4):e0170622
Submission	Registration date: 27-Oct-2022 University of Bern
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	44
Publications
PubMed	1
PMC	1
Other datasets
BioSample	44
Assembly	44

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

44
44

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_026223935.1	JAPJJC000000000	SAMN31484527	08KM1900	Klebsiella grimontii
GCA_026223915.1	JAPJJD000000000	SAMN31484526	20M0142	Klebsiella grimontii
GCA_026224085.1	JAPJJI000000000	SAMN31484521	7507.77	Klebsiella michiganensis
GCA_026224055.1	JAPJJJ000000000	SAMN31484520	8310.44	Klebsiella michiganensis
GCA_026224035.1	JAPJJG000000000	SAMN31484523	17KM0578	Klebsiella michiganensis
GCA_026224015.1	JAPJJH000000000	SAMN31484522	ZH142-C	Klebsiella michiganensis
GCA_026223965.1	JAPJJE000000000	SAMN31484525	15A0136	Klebsiella michiganensis
GCA_026224695.1	JAPJKM000000000	SAMN31484491	7907.29	Klebsiella michiganensis
GCA_026224675.1	JAPJKL000000000	SAMN31484492	5401.38	Klebsiella michiganensis
GCA_026224605.1	JAPJKK000000000	SAMN31484493	1312240753	Klebsiella michiganensis
GCA_026224455.1	JAPJKC000000000	SAMN31484501	8208.45	Klebsiella michiganensis
GCA_026224435.1	JAPJKB000000000	SAMN31484502	8011.16	Klebsiella michiganensis
GCA_026224385.1	JAPJKA000000000	SAMN31484503	7806.19	Klebsiella michiganensis
GCA_026224395.1	JAPJJZ000000000	SAMN31484504	7202.3	Klebsiella michiganensis
GCA_026223955.1	JAPJJF000000000	SAMN31484524	15090013	Klebsiella michiganensis
GCA_026224715.1	JAPJKN000000000	SAMN31484490	7606.66	Klebsiella michiganensis
GCA_026224375.1	JAPJJY000000000	SAMN31484505	8311.01	Klebsiella oxytoca
GCA_026224355.1	JAPJJW000000000	SAMN31484507	8310.32	Klebsiella oxytoca
GCA_026224335.1	JAPJJX000000000	SAMN31484506	8309.06	Klebsiella oxytoca
GCA_026224315.1	JAPJJV000000000	SAMN31484508	8310.33	Klebsiella oxytoca
GCA_026224285.1	JAPJJS000000000	SAMN31484511	8111.31	Klebsiella oxytoca
GCA_026224275.1	JAPJJU000000000	SAMN31484509	8306.21	Klebsiella oxytoca
GCA_026224245.1	JAPJJT000000000	SAMN31484510	8108.57	Klebsiella oxytoca
GCA_026224235.1	JAPJJR000000000	SAMN31484512	8005.38-1	Klebsiella oxytoca
GCA_026224215.1	JAPJJQ000000000	SAMN31484513	8005.38-2	Klebsiella oxytoca
GCA_026224195.1	JAPJJO000000000	SAMN31484515	7610.07	Klebsiella oxytoca
GCA_026224165.1	JAPJJN000000000	SAMN31484516	7707.06	Klebsiella oxytoca
GCA_026224155.1	JAPJJP000000000	SAMN31484514	7510.48	Klebsiella oxytoca
GCA_026224135.1	JAPJJM000000000	SAMN31484517	7802.78	Klebsiella oxytoca
GCA_026224115.1	JAPJJL000000000	SAMN31484518	7907.16	Klebsiella oxytoca
GCA_026224075.1	JAPJJK000000000	SAMN31484519	08KM1888	Klebsiella oxytoca
GCA_026224645.1	JAPJKI000000000	SAMN31484495	7407.04	Klebsiella oxytoca
GCA_026224595.1	JAPJKJ000000000	SAMN31484494	8212.48	Klebsiella oxytoca
GCA_026224545.1	JAPJKH000000000	SAMN31484496	15KM0222	Klebsiella oxytoca
GCA_026224535.1	JAPJKG000000000	SAMN31484497	13KM0084	Klebsiella oxytoca
GCA_026224505.1	JAPJKD000000000	SAMN31484500	KM24/09	Klebsiella oxytoca
GCA_026224495.1	JAPJKF000000000	SAMN31484498	13KM1040	Klebsiella oxytoca
GCA_026224475.1	JAPJKE000000000	SAMN31484499	KM57/09	Klebsiella oxytoca
GCA_026223895.1	JAPJIY000000000	SAMN31484531	09KM0284	Klebsiella oxytoca
GCA_026223825.1	JAPJJA000000000	SAMN31484529	17KM1096	Klebsiella oxytoca
GCA_026223815.1	JAPJIZ000000000	SAMN31484530	14/F0005	Klebsiella oxytoca
GCA_026223975.1	JAPJJB000000000	SAMN31484528	15Km1352	Klebsiella pasteurii
GCA_026223875.1	JAPJIX000000000	SAMN31484532	7710.74	Klebsiella pneumoniae
GCA_026223855.1	JAPJIW000000000	SAMN31484533	8207.22	Raoultella ornithinolytica

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Detection of extended-spectrum beta-lactamase producers in the Klebsiella oxytoca complex

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