Marine Bacteria; Vibrio, Psychromonas, Neptunomona... (ID 905473) - BioProject

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Accession: PRJNA905473 ID: 905473

Marine Bacteria; Vibrio, Psychromonas, Neptunomonas, Halomonas

Marine bacteria communities and isolates growing on Fucus leachate. Genome sequencing and assembly

A dataset containing the community composition (16s rRNA) of natural marine communities growing on Fucus Leachate. Also whole genomes and transcriptomics of representative isolates.

Accession	PRJNA905473
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Yu XA et al., "Low-level resource partitioning supports coexistence among functionally redundant bacteria during successional dynamics.", ISME J, 2024 Jan 8;18(1)
Grants	"Assembling Reusable Genetic Modules for Efficient Biofuel Production from Marine Macroalgae" (Grant ID DE-SC0008743, United States Department of Energy)
Submission	Registration date: 25-Nov-2022 MIT

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	10
SRA Experiments	57
Publications
PubMed	1
PMC	1
Other datasets
BioSample	67
Assembly	10

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

10
10

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_036697315.1	JBAHZB000000000	SAMN39610117	14N.309.X.WAT.G.H12	Alteromonas sp. 14N.309.X.WAT.G.H12
GCA_036697265.1	JBAHVS000000000	SAMN39610118	14N.309.X.SLOW.A.C6	Arenibacter palladensis
GCA_036697285.1	JBAHYZ000000000	SAMN39610116	14N.309.X.WAT.G.D12	Celeribacter halophilus
GCA_030397495.1	JAPNXT000000000	SAMN31874746	14N.309.X.WAT.E.A4	Cobetia sp. 14N.309.X.WAT.E.A4
GCA_030397555.1	JAPNXU000000000	SAMN31874747	CHC150	Neptunomonas sp. CHC150
GCA_036697305.1	JBAHVT000000000	SAMN39610115	14N.309.X.WAT.C.G1	Pseudoalteromonas carrageenovora
GCA_036697365.1	JBAHZA000000000	SAMN39610113	14N.309.X.SLOW.A.F1	Psychromonas arctica
GCA_030397575.1	JAPNXS000000000	SAMN31874745	14N.309.X.WAT.B.A12	Psychromonas sp. 14N.309.X.WAT.B.A12
GCA_036697355.1	JBAHVU000000000	SAMN39610114	14N.309.X.WAT.B.H12	Vibrio coralliirubri
GCA_030397615.1	JAPNXR000000000	SAMN31874744	14N.309.X.WAT.E.F5	Vibrio sp. 14N.309.X.WAT.E.F5

SRA Data Details

Parameter	Value
Data volume, Gbases	4
Data volume, Mbytes	3265

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Link to WGS master record(s)

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Marine Bacteria; Vibrio, Psychromonas, Neptunomonas, Halomonas
Marine Bacteria; Vibrio, Psychromonas, Neptunomonas, Halomonas
Marine bacteria communities and isolates growing on Fucus leachate. Genome sequencing and assembly

BioProject
RecName: Full=N-terminal Xaa-Pro-Lys N-methyltransferase 2; AltName: Full=Alpha ...
RecName: Full=N-terminal Xaa-Pro-Lys N-methyltransferase 2; AltName: Full=Alpha N-terminal protein methyltransferase 1B; AltName: Full=Methyltransferase-like protein 11B; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1B; Short=NTM1B
gi|269849617|sp|Q5VVY1.2|NTM1B_HUMA

Protein
Homo sapiens retina and anterior neural fold homeobox 2 (RAX2), RefSeqGene (LRG_...
Homo sapiens retina and anterior neural fold homeobox 2 (RAX2), RefSeqGene (LRG_1200) on chromosome 19
gi|224922767|ref|NG_011565.1||gnl|L G_1200

Nucleotide
RecName: Full=Voltage-gated potassium channel subunit beta-2; AltName: Full=K(+)...
RecName: Full=Voltage-gated potassium channel subunit beta-2; AltName: Full=K(+) channel subunit beta-2; AltName: Full=Kv-beta-2; Short=hKvbeta2
gi|18202496|sp|Q13303.2|KCAB2_HUMAN

Protein
RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; Short=Met-1; Al...
RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; Short=Met-1; AltName: Full=DNA methyltransferase MmuI; Short=DNA MTase MmuI; Short=M.MmuI; AltName: Full=MCMT
gi|20141336|sp|P13864.5|DNMT1_MOUSE

Protein

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