Escherichia coli (ID 905944) - BioProject

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Accession: PRJNA905944 ID: 905944

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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9177 additional projects are related by organism.

Flow of Antimicrobial-resistance (AMR) determinants in a commercial laying hen farm

Accession	PRJNA905944
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Aldea I et al., "Clonal and plasmid-mediated flow of ESBL/AmpC genes in Escherichia coli in a commercial laying hen farm.", Vet Microbiol, 2022 Jul;270:109453
Grants	"Assessment and dynamics of antibiotics residues, resistance genes and antibiotic resistant bacteria in organic amendments from food animals and urban waste and agricultural soils (where organics amendments are used as fertilizers)." (Grant ID RTA2014-00012-C03-03, Spanish Ministerio de Economía y Competitividad) "ECO-HEN Dynamics of Escherichia coli in laying hens" (Grant ID 773830, European Union Horizon 2020 Research and Innovation Programme)
Submission	Registration date: 10-Jan-2023 Universidad Complutense de Madrid

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	54
Publications
PubMed	1
Other datasets
BioSample	65
Assembly	54

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

35
19
54

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_027706665.1	JAQFWN000000000	SAMN32596139	L3M1-CTX09	Escherichia coli
GCA_027706625.1	JAQFWM000000000	SAMN32596126	L3M1-CTX07	Escherichia coli
GCA_027706635.1	JAQFWO000000000	SAMN32596283	L3M2-CTX05	Escherichia coli
GCA_027706545.1	JAQFWK000000000	SAMN32595783	L2M4-CTX06	Escherichia coli
GCA_027706565.1	JAQFWL000000000	SAMN32595805	L3M1-CIP10	Escherichia coli
GCA_027706465.1	JAQFWJ000000000	SAMN32595669	L2M3-CTX03	Escherichia coli
GCA_027946735.1	JAQJIY000000000	SAMN32769436	L3M3-CTX01	Escherichia coli
GCA_027946745.1	JAQJIX000000000	SAMN32769423	L3M2-CTX10	Escherichia coli
GCA_027946815.1	JAQJIW000000000	SAMN32769406	L2M4-CTX02	Escherichia coli
GCA_027946795.1	JAQJIV000000000	SAMN32769098	L2M2-CTX05	Escherichia coli
GCA_027941635.1	JAQIZC000000000	SAMN32755910	L4M4-CTX03	Escherichia coli
GCA_027941615.1	JAQIZB000000000	SAMN32744179	L4M4-CTX05	Escherichia coli
GCA_027941595.1	JAQIZD000000000	SAMN32755939	L2M2-CTX02	Escherichia coli
GCA_027941575.1	JAQIYY000000000	SAMN32743928	L3M4-CTX3E	Escherichia coli
GCA_027941555.1	JAQIYZ000000000	SAMN32743985	L3M8-CTX03	Escherichia coli
GCA_027941515.1	JAQIYX000000000	SAMN32743927	L3M4-CTX01	Escherichia coli
GCA_027941525.1	JAQIZA000000000	SAMN32744166	L4M4-CTX02	Escherichia coli
GCA_027921485.1	JAQIZP000000000	SAMN32228837	L3M3-CTX05	Escherichia coli
GCA_027921505.1	JAQIZS000000000	SAMN32228843	L4M4-CTX08	Escherichia coli
GCA_027921495.1	JAQIZO000000000	SAMN32228828	L2M4-CTX10	Escherichia coli
GCA_027921465.1	JAQIZQ000000000	SAMN32228838	L2M3-CTX01	Escherichia coli
GCA_027920945.1	JAQIYV000000000	SAMN32575901	L1M8-CTX01	Escherichia coli
GCA_027920955.1	JAQIYU000000000	SAMN32575825	L1M4-CTX01	Escherichia coli
GCA_027920935.1	JAQIYW000000000	SAMN32575908	L2M3-CTX02	Escherichia coli
GCA_027920925.1	JAQIYT000000000	SAMN32554742	L1M3-09	Escherichia coli
GCA_027920915.1	JAQIYS000000000	SAMN32554721	L1M2-CTX08	Escherichia coli
GCA_027920885.1	JAPVEJ000000000	SAMN32184772	L1M3-CIP07	Escherichia coli
GCA_027920855.1	JAPWGJ000000000	SAMN32192225	L3M2-CTX04	Escherichia coli
GCA_027920845.1	JAPVEP000000000	SAMN32185158	L2M7-CTX02	Escherichia coli
GCA_027920825.1	JAPWGI000000000	SAMN32191804	L3M1-CTX02	Escherichia coli
GCA_036631995.1	JAPVEN000000000	SAMN32184918	L2M4-08	Escherichia coli
GCA_036631935.1	JAPVEO000000000	SAMN32185117	L2M7-10	Escherichia coli
GCA_036631895.1	JAPVEM000000000	SAMN32184910	L2M2-05	Escherichia coli
GCA_036631905.1	JAPVEQ000000000	SAMN32185636	L2M6H-1E	Escherichia coli
GCA_036631835.1	JAPVEL000000000	SAMN32184870	L2M1-02	Escherichia coli
GCA_036631765.1	JAPVEK000000000	SAMN32184857	L1M4-02	Escherichia coli
GCA_036631775.1	JAPVEH000000000	SAMN32183301	L1M2-10	Escherichia coli
GCA_036631715.1	JAPVEI000000000	SAMN32184710	L1M2-CIP02	Escherichia coli
GCA_036631655.1	JAPVEG000000000	SAMN32183292	L1M1-09	Escherichia coli
GCA_036631635.1	JAPUCI000000000	SAMN32143581	L2M4-03	Escherichia coli
GCA_036631515.1	JAPUCH000000000	SAMN32143497	L1M3-CIP07	Escherichia coli
GCA_036632055.1	JAPZDR000000000	SAMN32299601	L1M1-01	Escherichia coli
GCA_036632015.1	JARBFU000000000	SAMN32192307	L3M3-CTX07	Escherichia coli
GCA_037994605.1	JBBNBQ000000000	SAMN33196906	L3M2-04	Escherichia coli
GCA_028764905.1	JARADN000000000	SAMN33319915	L4M6-06	Escherichia coli
GCA_028863865.1	JARBGA000000000	SAMN33319943	L2M4-06	Escherichia coli
GCA_028649515.1	JAQSIM000000000	SAMN33196907	L3M6-CIP04	Escherichia coli
GCA_028649495.1	JAQSIL000000000	SAMN33196885	L3M1-07	Escherichia coli
GCA_028649315.1	JAQSVB000000000	SAMN33099572	L2M4-02	Escherichia coli
GCA_028599485.1	JAQRFE000000000	SAMN33169486	L2M4-10	Escherichia coli
GCA_028599335.1	JAQRFF000000000	SAMN33169492	L3M1-01	Escherichia coli
GCA_028994675.1	JARDWL000000000	SAMN32782229	L1M2-COL02	Escherichia coli
GCA_028994655.1	JARDWK000000000	SAMN32781643	L3M2-CTX01	Escherichia coli
GCA_028994715.1	JARDWM000000000	SAMN33099556	L1M4-CIP04	Escherichia coli

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Escherichia coli Genome sequencing and assembly

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