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Accession: PRJNA912362 ID: 912362

Draft genomes of Salmonella enterica in a swine farm in Sichuan province, China

A total of 54 Salmonella enterica strains were isolated from a swine farm in Sichuan province, China, most of which belonged to S. enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-.
AccessionPRJNA912362
Data TypeGenome sequencing
ScopeMultispecies
PublicationsZhou L et al., "Prevalence and genetic diversity of multidrug-resistant Salmonella Typhimurium monophasic variant in a swine farm from China.", Front Microbiol, 2023;14:1200088
SubmissionRegistration date: 15-Dec-2022
Sichuan University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)54
Publications
PubMed1
PMC1
Other datasets
BioSample108
Assembly54
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
54
54
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_038380415.1ContigJAPVQU000000000SAMN32105010
1M-11
Salmonella enterica subsp. enterica serovar Enteritidis
GCA_038380395.1ContigJAPVQP000000000SAMN32105015
1M-9
Salmonella enterica subsp. enterica serovar Enteritidis
GCA_038380375.1ContigJAPVQO000000000SAMN32105016
3M-23
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380355.1ContigJAPVQN000000000SAMN32105017
3M-26
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380335.1ContigJAPVQK000000000SAMN32105020
6M-47
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380315.1ContigJAPVQM000000000SAMN32105018
6M-101
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380295.1ContigJAPVQJ000000000SAMN32105021
6M-48
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380275.1ContigJAPVQL000000000SAMN32105019
6M-46
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380255.1ContigJAPVQE000000000SAMN32105026
6M-55
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380235.1ContigJAPVPW000000000SAMN32105034
6M-64
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380175.1ContigJAPVPK000000000SAMN32105046
6M-80
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380205.1ContigJAPVPA000000000SAMN32105056
6M-93
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038380195.1ContigJAPVPU000000000SAMN32105036
6M-67
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373805.1ContigJAPVQI000000000SAMN32105022
6M-51
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373845.1ContigJAPVQG000000000SAMN32105024
6M-53
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373825.1ContigJAPVQH000000000SAMN32105023
6M-52
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373765.1ContigJAPVQB000000000SAMN32105029
6M-59
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373785.1ContigJAPVQF000000000SAMN32105025
6M-54
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373745.1ContigJAPVQC000000000SAMN32105028
6M-58
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373725.1ContigJAPVQA000000000SAMN32105030
6M-60
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373705.1ContigJAPVQD000000000SAMN32105027
6M-56
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373685.1ContigJAPVPZ000000000SAMN32105031
6M-61
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373645.1ContigJAPVPV000000000SAMN32105035
6M-65
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373625.1ContigJAPVPY000000000SAMN32105032
6M-62
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373465.1ContigJAPVPP000000000SAMN32105041
6M-72
Salmonella enterica subsp. enterica serovar Derby
GCA_038373595.1ContigJAPVPS000000000SAMN32105038
6M-69
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373575.1ContigJAPVPX000000000SAMN32105033
6M-63
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373545.1ContigJAPVPT000000000SAMN32105037
6M-68
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373505.1ContigJAPVPR000000000SAMN32105039
6M-70
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373455.1ContigJAPVPQ000000000SAMN32105040
6M-71
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373425.1ContigJAPVPM000000000SAMN32105044
6M-76
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373405.1ContigJAPVPO000000000SAMN32105042
6M-73
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373365.1ContigJAPVPN000000000SAMN32105043
6M-74
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373345.1ContigJAPVPL000000000SAMN32105045
6M-78
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373315.1ContigJAPVPJ000000000SAMN32105047
6M-81
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373285.1ContigJAPVPI000000000SAMN32105048
6M-82
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373255.1ContigJAPVPH000000000SAMN32105049
6M-83
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373205.1ContigJAPVPE000000000SAMN32105052
6M-89
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373225.1ContigJAPVPG000000000SAMN32105050
6M-84
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373175.1ContigJAPVPF000000000SAMN32105051
6M-88
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373135.1ContigJAPVPD000000000SAMN32105053
6M-90
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373095.1ContigJAPVPC000000000SAMN32105054
6M-91
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373055.1ContigJAPVPB000000000SAMN32105055
6M-92
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038373025.1ContigJAPVOZ000000000SAMN32105057
6M-94
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038372995.1ContigJAPVOW000000000SAMN32105060
6M-97
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038372965.1ContigJAPVOY000000000SAMN32105058
6M-95
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038372905.1ContigJAPVOX000000000SAMN32105059
6M-96
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038372825.1ContigJAPVOV000000000SAMN32105061
6M-98
Salmonella enterica subsp. enterica serovar Derby
GCA_038372845.1ContigJAPVQV000000000SAMN32105009
1M-10
Salmonella enterica subsp. enterica serovar Enteritidis
GCA_038372795.1ContigJAPVOU000000000SAMN32105062
6M-99
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_038372755.1ContigJAPVQS000000000SAMN32105012
1M-5
Salmonella enterica subsp. enterica serovar Enteritidis
GCA_038372735.1ContigJAPVQT000000000SAMN32105011
1M-12
Salmonella enterica subsp. enterica serovar Enteritidis
GCA_038372665.1ContigJAPVQQ000000000SAMN32105014
1M-8
Salmonella enterica subsp. enterica serovar Enteritidis
GCA_038372635.1ContigJAPVQR000000000SAMN32105013
1M-7
Salmonella enterica subsp. enterica serovar Enteritidis

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