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Genome Information for Vidua chalybeata
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The Vidua chalybeata is a songbird found throughout Africa. Male V. chalybeata display up to 24 songs, mostly mimicking the Red-billed Firefinch or Brown Firefinch, depending on the region. The V. chalybeata genome was originally sequenced and assembled in 2020 for the Birds 10000 Genomes (B10K) project using Illumina and PacBio sequencing (GCA_013398495.1). The bVidCha1 is resequenced and assembled from the same sample, as part of the VGP at a higher assembly quality; this is the primary haplotype. This genome is sponsored by Christopher N. Balakrishnan at East Carolina University.
| Accession | PRJNA912708 |
| Type | Umbrella project |
| Organism | Vidua chalybeata[Taxonomy ID: 81927] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua; Vidua chalybeata |
| Submission | Registration date: 15-Dec-2022
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 45223 |
| WGS master | 2 |
| Transcript | 44961 |
| SRA Experiments | 30 |
| Protein Sequences | 37887 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA889055 | Chromosomes | Vidua chalybeata | Vidua chalybeata (Village indigobird) genome, bVidCha1, merged haplotype (Vertebrate Genomes Project) | | PRJNA889056 | Contigs | Vidua chalybeata | Vidua chalybeata (Village indigobird) genome, bVidCha1, purge dup haplotype (Vertebrate Genomes Project) | | PRJNA940449 | Chromosomes | Vidua chalybeata | Vidua chalybeata (Village indigobird) ReSeq BioProject (NCBI) | | PRJNA1007608 | SRA or Trace | Vidua chalybeata (Village indigobird) genome, bVidCha1, sequence data. | Vidua chalybeata (Village indigobird) genome, bVidCha1, sequence data. (G10K) |
|