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Genome Information for Scomber japonicus
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The Pacific chub mackerel (Scomber japonicus) is a species of fish in the tuna and mackerel family, Scombridae. The chub mackerel has a well-developed swim bladder attached with the esophagus, which the "true mackerels" in the genus Scomber lack (from Wikipedia entry). This genome is from a male collected by JinGu Kim and Chul Lee in coastal waters off of South Korea, and coordinated by Chul Lee and Heebal Kim with funding from the Ministry of Ocean and Fisheries to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA914746 |
| Type | Umbrella project |
| Organism | Scomber japonicus[Taxonomy ID: 13676] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Scomber; Scomber japonicus |
| Submission | Registration date: 21-Dec-2022
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 34801 |
| WGS master | 2 |
| Transcript | 34390 |
| Protein Sequences | 30506 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
2
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA912108 | Chromosomes | Scomber japonicus | Scomber japonicus (Pacific chub mackerel) genome fScoJap1, primary haplotype (Vertebrate Genomes Project) | | PRJNA912109 | Scaffolds | Scomber japonicus | Scomber japonicus (Pacific chub mackerel) genome fScoJap1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA928096 | Chromosomes | Scomber japonicus | Scomber japonicus isolate:fScoJap1 RefSeq Genome sequencing and assembly (NCBI) |
|