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Genome Information for Sorex araneus
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The European shrew (Sorex araneus) is the most common shrew and one of the most common mammals, throughout Northern Europe. It is one of the rare venomous mammals and has a life span of approximately 14 months (from Wikipedia entry). This genome is from a juvenile male at the Max Planck Institute of Animal Behavior in Radolfzell, Germany, collected by Marion Muturi, and procured by Liliana M. Davalos and William Thomas at Stony Brook University, New York, to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA922145 |
| Type | Umbrella project |
| Organism | Sorex araneus[Taxonomy ID: 42254] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex; Sorex araneus |
| Submission | Registration date: 9-Jan-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 44725 |
| WGS master | 2 |
| Transcript | 44633 |
| SRA Experiments | 17 |
| Protein Sequences | 39879 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA916523 | Chromosomes | Sorex araneus | Sorex araneus (European shrew) genome, mSorAra2, primary haplotype (Vertebrate Genomes Project) | | PRJNA916524 | Contigs | Sorex araneus | Sorex araneus (European shrew) genome, mSorAra2, alternate haplotype (Vertebrate Genomes Project) | | PRJNA953984 | Chromosomes | Sorex araneus | Sorex araneus isolate:mSorAra2 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008663 | SRA or Trace | Sorex araneus (European shrew) genome, mSorAra2, sequence data | Sorex araneus (European shrew) genome, mSorAra2, sequence data (G10K) |
|