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Genome Information for Monodelphis domestica
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The gray short-tailed opossum (Monodelphis domestica) is a small marsupial that inhabits parts of South America. However, it does not have a true pouch. It is a research model as it breeds relatively easily in the laboratory, and neonates can be readily accessed. This gemone is from a captive bred colony, procured and collected by Leah Krubitzer at the University of California Davis and Rebecca Hodge at the Allen Institute for Brain Science, and used to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, lead by Olivier Fedrigo and Erich D. Jarvis, with support from Ed Lien and Trygve Bakken at the Allen Institute for Brain Science.
Accession | PRJNA922994 |
Type | Umbrella project |
Organism | Monodelphis domestica[Taxonomy ID: 13616] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis; Monodelphis domestica |
Submission | Registration date: 11-Jan-2023 Vertebrate Genomes Project |
Relevance | Reference genome |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 72414 |
WGS master | 2 |
Transcript | 72378 |
Protein Sequences | 62272 |
Publications |
PubMed | 3 |
PMC | 3 |
Other datasets |
BioSample | 1 |
Assembly | 2 |
This project encompasses the following 3 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total | 2 1 3
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BioProject accession | Assembly level | Organism | Title |
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PRJNA915592 | Chromosomes | Monodelphis domestica | Monodelphis domestica (gray short-tailed opossum) genome, mMonDom1, primary haplotype (Vertebrate Genomes Project) | PRJNA915591 | Scaffolds | Monodelphis domestica | Monodelphis domestica (gray short-tailed opossum) genome, mMonDom1, alternate haplotype (Vertebrate Genomes Project) | PRJNA967365 | Chromosomes | Monodelphis domestica | Monodelphis domestica isolate:mMonDom1 RefSeq Genome sequencing and assembly (NCBI) |
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