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Genome Information for Neofelis nebulosa
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The clouded leopard (Neofelis nebulosa) is a cat that inhabite dense forests from the foothills of the Himalayas through mainland Southeast Asia into South China (from Wikipedia entry). This genome is from a male at the Smithsonian National Zoo, in Washington DC, collected and procured the Veterinary Staff and Klaus-Peter Koepfli, to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis, with support from Jarvis for a COVID-19 research project.
| Accession | PRJNA927027 |
| Type | Umbrella project |
| Organism | Neofelis nebulosa[Taxonomy ID: 61452] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Neofelis; Neofelis nebulosa |
| Submission | Registration date: 24-Jan-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 81295 |
| WGS master | 2 |
| Transcript | 81219 |
| SRA Experiments | 3 |
| Protein Sequences | 62851 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 2 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA915742 | Chromosomes | Neofelis nebulosa | Neofelis nebulosa (Clouded leopard), mNeoNeb1, primary haplotype (Vertebrate Genomes Project) | | PRJNA915743 | Contigs | Neofelis nebulosa | Neofelis nebulosa (Clouded leopard), mNeoNeb1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA998453 | Chromosomes | Neofelis nebulosa | Neofelis nebulosa isolate:mNeoNeb1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1104293 | SRA or Trace | Neofelis nebulosa (Clouded leopard) transcriptome, mNeoNeb2 | Neofelis nebulosa (Clouded leopard) transcriptome, mNeoNeb2 (Vertebrate Genomes Project) |
|