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Genome Information for Lycodopsis pacificus
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Blackbelly eelpouts (Lycodopsis pacificus) are Perciformes fishes, that inhabit the Eastern Pacific: from the Gulf of Alaska, south, to northern Baja California, Mexico. They are found on silty or sandy bottoms (from fishbase entry). This sample is from a female in Monterey Bay, California, collected by Scott Hamilton of the Moss Landing Marine Laboratories, coordinated by Joanna Kelley of Washington State University, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University led by Olivier Fedrigo and Erich D. Jarvis. fLycPai1 was used instead of fLycPai1 assembly ID to distinguish it from Lycodapus pachysoma.
Accession | PRJNA928479 |
Type | Umbrella project |
Organism | Lycodopsis pacificus[Taxonomy ID: 1772091] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Zoarcidae; Lycodinae; Lycodopsis; Lycodopsis pacificus |
Submission | Registration date: 26-Jan-2023 Vertebrate Genomes Project |
Relevance | Reference genome |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 26 |
WGS master | 2 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 1 |
Assembly | 2 |
This project encompasses the following 2 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total | 1 1 2
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BioProject accession | Assembly level | Organism | Title |
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PRJNA921713 | Scaffolds | Lycodopsis pacificus | Lycodopsis pacificus (blackbelly eelpout) genome, fLycPai1, haplotype 1 (Vertebrate Genomes Project) | PRJNA921714 | Chromosomes | Lycodopsis pacificus | Lycodopsis pacificus (blackbelly eelpout) genome, fLycPai1, haplotype 2 (Vertebrate Genomes Project) |
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