ID 938176 - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA938176 ID: 938176

Metagenomic sequencing of marine hydrocarbon degrading microcosms

Whole community metagenomic sequencing of microbial hydrocarbon degradation in seawater with photo-oxidized and untreated oil amendments.

Accession	PRJNA938176
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 23-Feb-2023 University of Southern California
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	73
SRA Experiments	4
Other datasets
BioSample	77
Assembly	73

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

66
7
73

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_029213125.1	JARGNQ000000000	SAMN33612154	bin_bo_oilr1.012	Aeromicrobium sp.
GCA_029212515.1	JARGPQ000000000	SAMN33612206	bin_ti_oxhcr1.022	Akkermansiaceae bacterium
GCA_029212745.1	JARGOL000000000	SAMN33612175	bin_em_oilr2.007	Alcanivoracaceae bacterium
GCA_029213045.1	JARGPN000000000	SAMN33612203	bin_ti_oxhcr1.009	Alcanivoracaceae bacterium
GCA_029210325.1	JARGPU000000000	SAMN33612210	bin_to_oxhcr2.014	Alcanivoracaceae bacterium
GCA_029210245.1	JARGPT000000000	SAMN33612209	bin_to_oxhcr2.013	Alcanivorax jadensis
GCA_029210145.1	JARGOY000000000	SAMN33612188	bin_ji_oxhcr1.016	Alcanivorax sp.
GCA_029212835.1	JARGPE000000000	SAMN33612194	bin_ma_oilr2.020	Alphaproteobacteria bacterium
GCA_029212685.1	JARGOT000000000	SAMN33612183	bin_em_oilr2.035	Alteraurantiacibacter sp. bin_em_oilr2.035
GCA_029212575.1	JARGPK000000000	SAMN33612200	bin_ti_oxhcr1.003	Antarcticimicrobium sp.
GCA_029233985.1	JARGOK000000000	SAMN33612174	bin_em_oilr2.006	Candidatus Gracilibacteria bacterium
GCA_029213285.1	JARGNF000000000	SAMN33612143	bin_ak_oxhcr2.017	Candidatus Pelagibacter bacterium
GCA_029212885.1	JARGPC000000000	SAMN33612192	bin_ma_oilr2.010	Coxiellaceae bacterium
GCA_029212925.1	JARGOB000000000	SAMN33612165	bin_ce_oilr1.021	Coxiellaceae bacterium
GCA_029210045.1	JARGNX000000000	SAMN33612161	bin_ce_oilr1.011	Coxiellaceae bacterium
GCA_029212605.1	JARGOU000000000	SAMN33612184	bin_ji_oxhcr1.002	Cycloclasticus pugetii
GCA_029210065.1	JARGNW000000000	SAMN33612160	bin_ce_oilr1.003	Cycloclasticus sp.
GCA_029212565.1	JARGPM000000000	SAMN33612202	bin_ti_oxhcr1.007	Gammaproteobacteria bacterium
GCA_029212825.1	JARGPF000000000	SAMN33612195	bin_ma_oilr2.021	Gimesia sp.
GCA_029212665.1	JARGOO000000000	SAMN33612178	bin_em_oilr2.019	Hyphomonas sp.
GCA_029212945.1	JARGOR000000000	SAMN33612181	bin_em_oilr2.024	Immundisolibacteraceae bacterium
GCA_029212505.1	JARGOS000000000	SAMN33612182	bin_em_oilr2.032	Legionellaceae bacterium
GCA_029212465.1	JARGNV000000000	SAMN33612159	bin_ce_oilr1.001	Legionellaceae bacterium
GCA_029213075.1	JARGPO000000000	SAMN33612204	bin_ti_oxhcr1.014	Legionellaceae bacterium
GCA_029210265.1	JARGNP000000000	SAMN33612153	bin_bo_oilr1.011	Legionellaceae bacterium
GCA_029210085.1	JARGPP000000000	SAMN33612205	bin_ti_oxhcr1.015	Legionellaceae bacterium
GCA_029212805.1	JARGOA000000000	SAMN33612164	bin_ce_oilr1.020	Litorivicinaceae bacterium
GCA_029212725.1	JARGON000000000	SAMN33612177	bin_em_oilr2.013	Maricaulis sp.
GCA_029212345.1	JARGNM000000000	SAMN33612150	bin_ak_oxhcr2.035	Minwuia sp.
GCA_029213165.1	JARGNO000000000	SAMN33612152	bin_bo_oilr1.009	Minwuia sp.
GCA_029210175.1	JARGPL000000000	SAMN33612201	bin_ti_oxhcr1.005	Minwuia sp.
GCA_029212765.1	JARGOM000000000	SAMN33612176	bin_em_oilr2.012	Paracoccaceae bacterium
GCA_029213175.1	JARGNJ000000000	SAMN33612147	bin_ak_oxhcr2.028	Parvibaculaceae bacterium
GCA_029210345.1	JARGPV000000000	SAMN33612211	bin_to_oxhcr2.016	Parvibaculaceae bacterium
GCA_029209985.1	JARGNZ000000000	SAMN33612163	bin_ce_oilr1.015	Parvibaculaceae bacterium
GCA_029210275.1	JARGNN000000000	SAMN33612151	bin_bo_oilr1.007	Patescibacteria group bacterium
GCA_029212425.1	JARGNC000000000	SAMN33612140	bin_ak_oxhcr2.003	Phycisphaerales bacterium
GCA_029213305.1	JARGPA000000000	SAMN33612190	bin_ji_oxhcr1.024	Phycisphaerales bacterium
GCA_029213105.1	JARGNS000000000	SAMN33612156	bin_bo_oilr1.015	Planctomycetota bacterium
GCA_029212955.1	JARGOW000000000	SAMN33612186	bin_ji_oxhcr1.006	Planctomycetota bacterium
GCA_029212845.1	JARGPD000000000	SAMN33612193	bin_ma_oilr2.012	Planctomycetota bacterium
GCA_029210225.1	JARGOJ000000000	SAMN33612173	bin_em_oilr2.004	Planctomycetota bacterium
GCA_029210165.1	JARGNT000000000	SAMN33612157	bin_bo_oilr1.029	Ponticaulis sp.
GCA_029212965.1	JARGOV000000000	SAMN33612185	bin_ji_oxhcr1.003	Porticoccaceae bacterium
GCA_029210445.1	JARGPW000000000	SAMN33612212	bin_to_oxhcr2.030	Pseudohongiella nitratireducens
GCA_029210125.1	JARGPR000000000	SAMN33612207	bin_to_oxhcr2.003	Pseudomonadales bacterium
GCA_029213205.1	JARGNH000000000	SAMN33612145	bin_ak_oxhcr2.021	Pseudooceanicola sp.
GCA_029212525.1	JARGPG000000000	SAMN33612196	bin_ma_oilr2.029	Pseudophaeobacter sp. bin_em_oilr2.035
GCA_029212415.1	JARGOF000000000	SAMN33612169	bin_ce_oilr1.030	Rhizobiaceae bacterium
GCA_029233925.1	JARGOX000000000	SAMN33612187	bin_ji_oxhcr1.012	Rhizobiaceae bacterium
GCA_029212365.1	JARGOC000000000	SAMN33612166	bin_ce_oilr1.024	Roseovarius sp.
GCA_029213145.1	JARGNK000000000	SAMN33612148	bin_ak_oxhcr2.033	Rubripirellula sp.
GCA_029212405.1	JARGNR000000000	SAMN33612155	bin_bo_oilr1.014	Saprospiraceae bacterium
GCA_029213245.1	JARGNE000000000	SAMN33612142	bin_ak_oxhcr2.015	Saprospiraceae bacterium
GCA_029233945.1	JARGOQ000000000	SAMN33612180	bin_em_oilr2.023	Sneathiella sp.
GCA_029212695.1	JARGNL000000000	SAMN33612149	bin_ak_oxhcr2.034	Sulfitobacter sp.
GCA_029212785.1	JARGOG000000000	SAMN33612170	bin_em_oilr2.001	Thalassobaculaceae bacterium
GCA_029210095.1	JARGPS000000000	SAMN33612208	bin_to_oxhcr2.009	Thalassolituus oleivorans
GCA_029212275.1	JARGOI000000000	SAMN33612172	bin_em_oilr2.003	Thalassolituus sp.
GCA_029212905.1	JARGPB000000000	SAMN33612191	bin_ma_oilr2.008	Thalassovita sp.
GCA_029212645.1	JARGND000000000	SAMN33612141	bin_ak_oxhcr2.013	Vannielia sp.
GCA_029233965.1	JARGOP000000000	SAMN33612179	bin_em_oilr2.020	Verrucomicrobiales bacterium
GCA_029212615.1	JARGPJ000000000	SAMN33612199	bin_me_oilr1.013	Verrucomicrobiales bacterium
GCA_029212285.1	JARGOH000000000	SAMN33612171	bin_em_oilr2.002	Verrucomicrobiales bacterium
GCA_029213065.1	JARGPH000000000	SAMN33612197	bin_ma_oilr2.031	Verrucomicrobiales bacterium
GCA_029213025.1	JARGOZ000000000	SAMN33612189	bin_ji_oxhcr1.018	Verrucomicrobiales bacterium
GCA_029213005.1	JARGPI000000000	SAMN33612198	bin_ma_oilr2.032	Verrucomicrobiales bacterium
GCA_029213265.1	JARGNG000000000	SAMN33612144	bin_ak_oxhcr2.018	Verrucomicrobiales bacterium
GCA_029213195.1	JARGNI000000000	SAMN33612146	bin_ak_oxhcr2.025	Verrucomicrobiales bacterium
GCA_029210205.1	JARGOD000000000	SAMN33612167	bin_ce_oilr1.025	Verrucomicrobiales bacterium
GCA_029212485.1	JARGNY000000000	SAMN33612162	bin_ce_oilr1.014	Vicingaceae bacterium
GCA_029210015.1	JARGOE000000000	SAMN33612168	bin_ce_oilr1.026	Vicingaceae bacterium
GCA_029212375.1	JARGNU000000000	SAMN33612158	bin_bo_oilr1.030	Zhongshania sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	30
Data volume, Mbytes	10081

BioProject

Result Filters

Display Settings:

Send to:

Metagenomic sequencing of marine hydrocarbon degrading microcosms

Supplemental Content

Related information

Recent activity