See
Genome Information for Hoplias malabaricus
Navigate Up
Navigate Across
Hoplias malabaricus (trahira) is a predatory Central and South American freshwater ray-finned fish of the characiform family Erythrinidae. Like other members of the genus Hoplias, this species has a cylindrical body shape with a large mouth equipped with prominent teeth (from Wikipedia entry). This genome is from a male in Represa do Rio Monjolinho in Sao Paulo, Brazil, coordinated by Marcelo de Bello Cioffi at the Universidade Federal de Sao Carlos, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA952991 |
| Type | Umbrella project |
| Organism | Hoplias malabaricus[Taxonomy ID: 27720] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Erythrinidae; Hoplias; Hoplias malabaricus |
| Submission | Registration date: 6-Apr-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 56411 |
| WGS master | 2 |
| Transcript | 55751 |
| SRA Experiments | 11 |
| Protein Sequences | 46100 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
3
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA923842 | Chromosomes | Hoplias malabaricus | Hoplias malabaricus (trahira) genome, fHopMal1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA923843 | Chromosomes | Hoplias malabaricus | Hoplias malabaricus (trahira) genome, fHopMal1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1136869 | Chromosomes | Hoplias malabaricus | Hoplias malabaricus isolate:fHopMal1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1149712 | SRA or Trace | Hoplias malabaricus (trahira) genome, fHopMal1, sequence data | Hoplias malabaricus (trahira) genome, fHopMal1, sequence data (Vertebrate Genomes Project) |
|