See
Genome Information for Trichomycterus rosablanca
Navigate Up
Navigate Across
Trichomycterus rosablanca is a new troglobitic catfish species from caves in southeastern Santander, Colombia. These caves are drained by the Carare River of the Magdalena River basin. The new species is characterized by the advanced condition in the typical troglomorphisms found in other congeneric cave-dwelling species, such as absence of eyes and pigmentation (written by Carlos DoNascimiento 2018, Biota Colombiana). This genome is from a male found in Andes caves in Santander, Colombia, collected by Mauricio Torres and coordinated by Daniel Cadena to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP) and a Colombia Genomes Project. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA971190 |
| Type | Umbrella project |
| Organism | Trichomycterus rosablanca[Taxonomy ID: 2290929] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Trichomycteridae; Trichomycterus; Trichomycterus rosablanca |
| Submission | Registration date: 10-May-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 43286 |
| WGS master | 2 |
| Transcript | 42881 |
| SRA Experiments | 11 |
| Protein Sequences | 34453 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA924296 | Chromosomes | Trichomycterus rosablanca | Trichomycterus rosablanca (Rosablanca cavefish) genome, fTriRos1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA924297 | Scaffolds | Trichomycterus rosablanca | Trichomycterus rosablanca (Rosablanca cavefish) genome, fTriRos1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1074370 | Chromosomes | Trichomycterus rosablanca | Trichomycterus rosablanca isolate:fTriRos1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1147607 | SRA or Trace | Trichomycterus rosablanca (Rosablanca cavefish) genome, fTriRos1, sequence data | Trichomycterus rosablanca (Rosablanca cavefish) genome, fTriRos1, sequence data (Vertebrate Genomes Project) |
|