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Accession: PRJNA971772 ID: 971772

Colonisation of extended spectrum b-lactamase and carbapenemase-producing bacteria on hospital surfaces from low- and middle-income countries

Inanimate surfaces in hospital settings are among the most critical factors in the emergence and spread of nosocomial infections including neonatal sepsis, which is associated with increased mortality in low- and middle-income countries. More...
AccessionPRJNA971772
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 12-May-2023
University of Oxford
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)128
WGS master126
Genomic DNA2
Protein Sequences8660
Other datasets
BioSample128
Assembly128
Assembly details:
Assembly levelNumber of Assemblies
2
126
128
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_033034115.1ContigJASGQT000000000
SAMN35054369
NKE-197A
GCA_033034015.1ContigJASGQS000000000
SAMN35054370
NKE-84-2
GCA_033031165.1ContigJASPKW000000000
SAMN35054372
RU-E125
GCA_033031145.1ContigJASPKV000000000
SAMN35054373
RU-E131.1
GCA_033031125.1ContigJASGNO000000000
SAMN35054374
RU-E233
GCA_033031075.1ContigJASPKU000000000
SAMN35054375
RU-E319
GCA_033030945.1ContigJASGNK000000000
SAMN35054376
RU-E355
GCA_033030705.1ContigJASGNI000000000
SAMN35054377
ZAT-E765.1
GCA_033034515.1ContigJASGRC000000000
SAMN35054378
BC-E-347_S43
GCA_033034985.1ContigJASGRV000000000
SAMN35054481
BC-E258
GCA_033031475.1ContigJASGOG000000000
SAMN35054496
PP-E699.1
GCA_033031085.1ContigJASGNM000000000
SAMN35054382
RU-E328
GCA_033031045.1ContigJASGNN000000000
SAMN35054381
RU-E319.3
GCA_033031455.1ContigJASGOF000000000
SAMN35054386
PP-E700.2A
GCA_033033875.1ContigJASGQN000000000
SAMN35054385
NNE-499-1
GCA_033033855.1ContigJASGQO000000000
SAMN35054384
NNE-423
GCA_033033975.1ContigJASGQQ000000000
SAMN35054371
NNE-179
GCA_033033775.1ContigJASGQL000000000
SAMN35054402
PP-E-1001-3
GCA_033033695.1ContigJASGQM000000000
SAMN35054401
NWE-48-1
GCA_033034355.1ContigJASGQU000000000
SAMN35054400
NKE-179A
GCA_033034195.1ContigJASGQV000000000
SAMN35054399
NKE-171A
GCA_033035025.1ContigJASGRX000000000
SAMN35054388
BC-E-317-2
GCA_033034765.1ContigJASGRJ000000000
SAMN35054394
BK-E819.1
GCA_033034745.1ContigJASGRK000000000
SAMN35054393
BK-E778.1B
GCA_033034725.1ContigJASGRI000000000
SAMN35054395
BK-E821.1
GCA_033034705.1ContigJASGRH000000000
SAMN35054396
BK-E824.1
GCA_033034575.1ContigJASGRE000000000
SAMN35054397
BK-E837.2
GCA_033033075.1ContigJASGPM000000000
SAMN35054409
PP-E-991-3
GCA_033033035.1ContigJASGPK000000000
SAMN35054410
PP-E1015.2
GCA_033032995.1ContigJASGPJ000000000
SAMN35054411
PP-E1018.2
GCA_033032955.1ContigJASGPH000000000
SAMN35054412
PP-E1022
GCA_033033375.1ContigJASGQB000000000
SAMN35054403
PP-E-379_S36
GCA_033033335.1ContigJASGPZ000000000
SAMN35054404
PP-E-484
GCA_033033275.1ContigJASGPW000000000
SAMN35054405
PP-E-698-1
GCA_033033215.1ContigJASGPU000000000
SAMN35054406
PP-E-737-2-A
GCA_033033175.1ContigJASGPR000000000
SAMN35054407
PP-E-829
GCA_033033115.1ContigJASGPP000000000
SAMN35054408
PP-E-911
GCA_033034965.1ContigJASGRU000000000
SAMN35054383
BC-E28
GCA_033034945.1ContigJASGRT000000000
SAMN35054389
BC-E389
GCA_033034925.1ContigJASGRS000000000
SAMN35054390
BC-E431
GCA_033034865.1ContigJASGRO000000000
SAMN35054392
BK-E-825-2
GCA_033034845.1ContigJASGRP000000000
SAMN35054391
BK-E-811-1
GCA_033035065.1ContigJASGRY000000000
SAMN35054387
BC-E-303-1
GCA_033031435.1ContigJASGNY000000000
SAMN35054420
PP-E860
GCA_033031735.1ContigJASGOR000000000
SAMN35054417
PP-E473
GCA_033031695.1ContigJASGOP000000000
SAMN35054418
PP-E509A
GCA_033031635.1ContigJASGOL000000000
SAMN35054419
PP-E651.2
GCA_033034215.1ContigJASGQW000000000
SAMN35054398
NKE-166
GCA_033031835.1ContigJASGOW000000000
SAMN35054413
PP-E346.1
GCA_033031815.1ContigJASGOV000000000
SAMN35054414
PP-E370.1
GCA_033031795.1ContigJASGOU000000000
SAMN35054415
PP-E370.2
GCA_033031775.1ContigJASGOT000000000
SAMN35054416
PP-E375.1
GCA_033030935.1ContigJASPKT000000000
SAMN35054423
RU-E68.3
GCA_033031195.1ContigJASGNP000000000
SAMN35054422
RK-E270.2
GCA_033031245.1ContigJASGNR000000000
SAMN35054421
RK-E110.1B
GCA_033030905.1ContigJASGNJ000000000
SAMN35054424
ZAT-E765.1-B
GCA_033031285.1ContigJASGNU000000000
SAMN35054427
PP-E920.2
GCA_033033815.1ContigJASGQJ000000000
SAMN35054425
PP-E-1018-5
GCA_033057715.1ContigJASGOB000000000
SAMN35054426
PP-E764
GCA_033033315.1ContigJASGPY000000000
SAMN35054379
PP-E-639-1-A
GCA_033031375.1ContigJASGOA000000000
SAMN35054380
PP-E819.1
GCA_033031515.1ContigJASGOE000000000
SAMN35054429
PP-E700.2B
GCA_033031495.1ContigJASGOD000000000
SAMN35054430
PP-E732.3
GCA_033031585.1ContigJASGOJ000000000
SAMN35054428
PP-E660.1
GCA_033031535.1ContigJASGOI000000000
SAMN35054462
PP-E68A
GCA_033031415.1ContigJASGOC000000000
SAMN35054463
PP-E748.1
GCA_033031615.1ContigJASGOO000000000
SAMN35054460
PP-E509B
GCA_033031575.1ContigJASGOK000000000
SAMN35054461
PP-E659
GCA_033031755.1ContigJASGOS000000000
SAMN35054459
PP-E379
GCA_033031915.1ContigJASPKX000000000
SAMN35054434
PP-E-567_S47
GCA_033031895.1ContigJASGOZ000000000
SAMN35054456
PP-E286.1
GCA_033031875.1ContigJASGOY000000000
SAMN35054457
PP-E290.1
GCA_033031855.1ContigJASGOX000000000
SAMN35054458
PP-E319.9
GCA_033031395.1ContigJASGNZ000000000
SAMN35054464
PP-E819.3
GCA_033031345.1ContigJASGNX000000000
SAMN35054465
PP-E870.1
GCA_033031295.1ContigJASGNV000000000
SAMN35054467
PP-E907.1A
GCA_033031275.1ContigJASGNW000000000
SAMN35054466
PP-E901.2
GCA_033030925.1ContigJASGNL000000000
SAMN35054468
RU-E344.2
GCA_033032845.1ContigJASGPB000000000
SAMN35054454
PP-E259.2
GCA_033032825.1ContigJASGPA000000000
SAMN35054455
PP-E271.1
GCA_033032895.1ContigJASGPD000000000
SAMN35054452
PP-E1219.3
GCA_033032875.1ContigJASGPC000000000
SAMN35054453
PP-E1439.2
GCA_033032935.1ContigJASGPF000000000
SAMN35054451
PP-E1031
GCA_033032975.1ContigJASGPG000000000
SAMN35054450
PP-E1023
GCA_033033295.1ContigJASGPX000000000
SAMN35054444
PP-E-660-2
GCA_033033355.1ContigJASGQA000000000
SAMN35054443
PP-E-444
GCA_033033515.1ContigJASGQH000000000
SAMN35054437
PP-E-1465-2_S17
GCA_033033475.1ContigJASGQF000000000
SAMN35054439
PP-E-165-4
GCA_033033455.1ContigJASGQG000000000
SAMN35054438
PP-E-165-1
GCA_033033435.1ContigJASGQE000000000
SAMN35054440
PP-E-283-1
GCA_033033415.1ContigJASGQD000000000
SAMN35054441
PP-E-332-1
GCA_033033395.1ContigJASGQC000000000
SAMN35054442
PP-E-341-1
GCA_033033095.1ContigJASGPN000000000
SAMN35054449
PP-E-938_S5
GCA_033033155.1ContigJASGPQ000000000
SAMN35054448
PP-E-864-1
GCA_033033195.1ContigJASGPS000000000
SAMN35054447
PP-E-785-1
GCA_033033255.1ContigJASGPV000000000
SAMN35054445
PP-E-723-1
GCA_033033235.1ContigJASGPT000000000
SAMN35054446
PP-E-747-2
GCA_033034415.1ContigJASGRA000000000
SAMN35054431
PP-E-285-1_S42
GCA_033034395.1ContigJASGQZ000000000
SAMN35054432
PP-E-334-1_S36
GCA_033034235.1ContigJASGQX000000000
SAMN35054435
PP-E-756_S12
GCA_033034315.1ContigJASGQY000000000
SAMN35054433
PP-E-535_S30
GCA_033033935.1ContigJASGQP000000000
SAMN35054436
NNE-269
GCA_033034055.1ContigJASGQR000000000
SAMN35054469
NNE-164
GCA_033031655.1ContigJASGOM000000000
SAMN35054470
PP-E580.1
GCA_033031265.1ContigJASGNT000000000
SAMN35054478
PP-E937.2
GCA_033031225.1ContigJASGNS000000000
SAMN35054479
PP-E991
GCA_033033675.1ContigJASGQI000000000
SAMN35054473
PP-E-1029_S18
GCA_033033595.1ContigJASGQK000000000
SAMN35054472
PP-E-1014_S24
GCA_033034475.1ContigJASGRB000000000
SAMN35054471
PP-E-1017-3_S47
GCA_033033135.1ContigJASGPO000000000
SAMN35054474
PP-E-929
GCA_033032915.1ContigJASGPE000000000
SAMN35054477
PP-E1103
GCA_033033015.1ContigJASGPI000000000
SAMN35054476
PP-E1019.2
GCA_033033055.1ContigJASGPL000000000
SAMN35054475
PP-E1013.2
GCA_034259185.1ChromosomeSAMN35054480
BC-E-317-1
GCA_033031555.1ContigJASGOH000000000
SAMN35054482
PP-E68B
GCA_033031675.1ContigJASGON000000000
SAMN35054491
PP-E527
GCA_033034785.1ContigJASGRL000000000
SAMN35054487
BK-E759.1
GCA_033035005.1ContigJASGRW000000000
SAMN35054483
BC-E-70
GCA_033034655.1ContigJASGRG000000000
SAMN35054488
BK-E825.1
GCA_033034635.1ContigJASGRF000000000
SAMN35054489
BK-E836.1
GCA_033034495.1ContigJASGRD000000000
SAMN35054490
ESI-E-0001-1B_S1
GCA_033034825.1ContigJASGRM000000000
SAMN35054486
BK-E702.1
GCA_033034905.1ContigJASGRR000000000
SAMN35054484
BC-E65
GCA_033034885.1ContigJASGRQ000000000
SAMN35054485
BK-E-792-1
GCA_033031715.1ContigJASGOQ000000000
SAMN35054492
PP-E493
GCA_033031185.1ContigJASGNQ000000000
SAMN35054493
RK-E270.1
GCA_034259165.1ChromosomeSAMN35054494
BK-E778.1A
GCA_033034805.1ContigJASGRN000000000
SAMN35054495
BK-E578

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