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Genome Information for Salminus brasiliensis
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The golden dorado (Salminus brasiliensis) is a large, predatory characiform freshwater fish found in central and east-central South America. Despite having Salminus in its name, it is not related to salmon species, nor to dorado saltwater fish. This sample was collected from an adult male in entrance of the Rio de la Plata, in Buenos Aires, Argentina, coordinated by Lisa Komoroske, and used to create at high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis, with funding support from Komoroske.
| Accession | PRJNA976265 |
| Type | Umbrella project |
| Organism | Salminus brasiliensis[Taxonomy ID: 930266] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Salmininae; Salminus; Salminus brasiliensis |
| Submission | Registration date: 25-May-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 28 |
| WGS master | 2 |
| SRA Experiments | 13 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
1
1
2
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA972453 | Chromosomes | Salminus brasiliensis | Salminus brasiliensis (golden dorado) genome, fSalBra1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA972454 | Scaffolds | Salminus brasiliensis | Salminus brasiliensis (golden dorado) genome, fSalBra1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1132730 | SRA or Trace | Salminus brasiliensis (dorado) transcriptome, fSalBra1 | Salminus brasiliensis (dorado) transcriptome, fSalBra1 (Vertebrate Genomes Project) | | PRJNA1149790 | SRA or Trace | Salminus brasiliensis (golden dorado) genome, fSalBra1, sequence data | Salminus brasiliensis (golden dorado) genome, fSalBra1, sequence data (Vertebrate Genomes Project) |
|