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Accession: PRJNA985904 ID: 985904

In vitro culture of human fecal microbiome, Clostridioides difficile and Clostridium scindens

Clostridium scindens secretome suppresses virulence gene expression of Clostridioides difficile in a bile-acid-independent manner

We used an automated multistage fermentor to study the antibacterial actions of Clostridium scindens and bile acids (BAs) on Clostridioides difficile in the presence/absence of a gut microbial community derived from healthy human donor fecal microbiota. More...
AccessionPRJNA985904
Data TypeRaw sequence reads, Metagenome, Other
ScopeEnvironment
Organismmixed culture metagenome[Taxonomy ID: 1306859]
unclassified sequences; metagenomes; ecological metagenomes; mixed culture metagenome
Grants
  • "Novel alternatives to antibiotics by mining human gut microbiome data" (Grant ID 6111-00471B, Independent Research Fund Denmark)
  • "Efficient discovery of novel antibiotics from human gut microbiota" (Grant ID 8104-00003B, Independent Research Fund Denmark)
SubmissionRegistration date: 21-Jun-2023
University of Copenhagen
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments52
Other datasets
BioSample52
SRA Data Details
ParameterValue
Data volume, Gbases303
Data volume, Tbytes0.21

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