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Items: 16

1.

Inducible CRISPR-targeted ‘knockdown’ of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

Nutrient resource prioritization in the human gut microbiota

Project data type: Genome sequencing and assembly
Scope:
Monoisolate
WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES
Accession:
PRJEB55384
ID:
1020031
2.

Microbiome of Paediatric IBD Patients

Project data type: Genome sequencing
Scope:
Monoisolate
MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY
Accession:
PRJEB45397
ID:
917980
3.

Isolation and Characterization of GABA producing Bacteroides strains

Project data type: Raw sequence reads
Scope:
Multispecies
University of Ottawa
Accession:
PRJNA898401
ID:
898401
4.

Genome sequencing and hybrid assembly of microbial isolates derived from the human gut.

Project data type: Genome sequencing and assembly
Scope:
Multispecies
CZ Biohub Microbiome Initiative
Accession:
PRJNA885826
ID:
885826
5.

Bacteroides finegoldii

Bacteroides finegoldii Raw sequence reads

Taxonomy:
Bacteroides finegoldii
Project data type: Raw sequence reads
Scope:
Monoisolate
Jiangnan University
Accession:
PRJNA786707
ID:
786707
6.

Design, construction, and in vivo augmentation of a complex gut bacterial community

Project data type: Raw sequence reads
Scope:
Multispecies
Stanford University
Accession:
PRJNA746600
ID:
746600
7.

Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes.

Project data type: Genome sequencing and assembly
Scope:
Multispecies
Yonsei University
Accession:
PRJNA678426
ID:
678426
8.

Precise quantification and tracking of gut bacterial strains following fecal transplantation demonstrates long-term stable engraftment and predicts outcome

Project data type: Genome sequencing and assembly
Scope:
Multispecies
Icahn School of Medicine at Mount Sinai
Accession:
PRJNA637878
ID:
637878
9.

Extensive transfer of genes for edible seaweed digestion from marine to human gut bacteria

Project data type: Raw sequence reads
Scope:
Multispecies
University of Michigan
Accession:
PRJNA625151
ID:
625151
10.

BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with isolates, genomes, and longitudinal metagenomics and metabolomic data

Project data type: Genome sequencing and assembly
Scope:
Multispecies
Massachusetts Institute of Technology
Accession:
PRJNA544527
ID:
544527
11.

Culturomics study of human gut microbiome

Project data type: Raw sequence reads
Scope:
Multispecies
South Dakota State University
Accession:
PRJNA494608
ID:
494608
12.

ON-rep-seq

Project data type: Raw sequence reads
Scope:
Multispecies
University of Copenhagen
Accession:
PRJNA483530
ID:
483530
13.

Whole genome and metagenomic sequencing of novel and characterised bacteria from healthy human donors

Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Wellcome Sanger Institute
Accession:
PRJEB10915
ID:
297013
14.

Refseq Prokaryotic Genome Annotation Project

Project data type: RefSeq Other
Scope:
Multispecies
NCBI
Accession:
PRJNA224116
ID:
224116
15.

Bacteroides finegoldii CL09T03C10

Reference genome for the Human Microbiome Project

Taxonomy:
Bacteroides finegoldii CL09T03C10
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Broad Institute
Accession:
PRJNA64831
ID:
64831
16.

Bacteroides finegoldii DSM 17565

Reference genome for the Human Microbiome Project

Taxonomy:
Bacteroides finegoldii DSM 17565
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Washington University Genome Sequencing Center
Accession:
PRJNA27823
ID:
27823

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