ruminant genome project (ID 438286) - BioProject

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Accession: PRJNA438286 ID: 438286

ruminant genome project

Ruminant Genome Project

Our study provides new insights into the origin and evolution of ruminants as well as a huge leap in the available data resources for studying ruminant biology.

Accession	PRJNA438286
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 3) Less...	Chen L et al., "Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.", Science, 2019 Jun 21;364(6446) More... Chen L et al., "Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.", Science, 2019 Jun 21;364(6446) Zhang C et al., "Draft genome of the milu (Elaphurus davidianus).", Gigascience, 2018 Feb 1;7(2) Li Z et al., "Draft genome of the reindeer (Rangifer tarandus).", Gigascience, 2017 Dec 1;6(12):1-5 Less...
Submission	Registration date: 14-Mar-2018 Northwestern Polytechnical University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	50
SRA Experiments	738
Publications
PubMed	3
PMC	2
Other datasets
BioSample	135
Assembly	50

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Total

50
50

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_006408695.1	SJXQ00000000	SAMN08714480	-	Aepyceros melampus
GCA_006408545.1	SJXN00000000	SAMN08714483	-	Alcelaphus buselaphus
GCA_002201775.1	NIVO00000000	SAMN06233879	-	Ammotragus lervia
GCA_006408585.1	SJYB00000000	SAMN08714490	-	Antidorcas marsupialis
GCA_021018645.1	JAJJWP000000000	SAMN08712244	-	Antilocapra americana
GCA_006410555.1	SJYO00000000	SAMN08714504	-	Capra ibex
GCA_003182615.2	NIYN00000000	SAMN06233877	-	Capra sibirica
GCA_006410635.1	SJYT00000000	SAMN08714507	-	Cephalophus harveyi
GCA_006408465.1	SJXR00000000	SAMN08714477	-	Cervus albirostris
GCA_006408615.1	SJXO00000000	SAMN08714482	-	Connochaetes taurinus
GCA_006408505.1	SJXP00000000	SAMN08714481	-	Damaliscus lunatus
GCA_021018665.1	JAJIZU000000000	SAMN07270940	milu-zoo-001	Elaphurus davidianus
GCA_006408755.1	SJYE00000000	SAMN08714486	-	Eudorcas thomsonii
GCA_006408565.1	SJXV00000000	SAMN08714473	-	Giraffa camelopardalis
GCA_006459105.1	SPDZ00000000	SAMN10176374	ZZ2017	Hydropotes inermis
GCA_006410655.1	SJYR00000000	SAMN08714511	-	Kobus ellipsiprymnus
GCA_006410535.1	SJYG00000000	SAMN08714484	-	Litocranius walleri
GCA_006408675.1	SJYC00000000	SAMN08714488	-	Madoqua kirkii
GCA_006461545.1	SPDX00000000	SAMN08714479	-	Moschus berezovskii
GCA_006459085.1	SGQJ00000000	SAMN10822789	FMD-10xLS	Moschus berezovskii
GCA_006461725.1	SPDY00000000	SAMN08714478	-	Moschus chrysogaster
GCA_006408485.1	SJXS00000000	SAMN08714476	-	Muntiacus crinifrons
GCA_006409035.1	SJXU00000000	SAMN08714474	-	Muntiacus muntjak
GCA_006408525.1	SJXT00000000	SAMN08714475	-	Muntiacus reevesi
GCA_006408635.1	SJYD00000000	SAMN08714487	-	Nanger granti
GCA_006410615.1	SJYA00000000	SAMN08714493	-	Neotragus moschatus
GCA_006410875.1	SJYV00000000	SAMN08714492	-	Neotragus pygmaeus
GCA_021018685.1	JAJJWQ000000000	SAMN08712243	-	Okapia johnstoni
GCA_006410675.1	SJYX00000000	SAMN08714489	-	Oreotragus oreotragus
GCA_006410575.1	SJYN00000000	SAMN08714510	-	Oryx gazella
GCA_006417275.1	SJXZ000000000	SAMN08714494	-	Ourebia ourebi
GCA_003121645.1	NIWH00000000	SAMN06233880	-	Ovis ammon
GCA_006410595.1	SJYP00000000	SAMN08714503	-	Ovis ammon
GCA_006410695.1	SJYS00000000	SAMN08714509	-	Philantomba maxwellii
GCA_006410515.1	SJYF00000000	SAMN08714485	-	Procapra przewalskii
GCA_003182575.1	NIZD00000000	SAMN06233878	-	Pseudois nayaur
GCA_022457185.1	JAJJMQ000000000	SAMN07274499	DF-B-001	Rangifer tarandus
GCA_006410735.1	SJYW00000000	SAMN08714491	-	Raphicerus campestris
GCA_006410935.1	SJYQ00000000	SAMN08714512	-	Redunca redunca
GCA_006408735.1	SJYH00000000	SAMN08714508	-	Sylvicapra grimmia
GCA_006408785.2	SJXX00000000	SAMN08714496	-	Syncerus caffer
GCA_006411685.1	SJYJ000000000	SAMN08714501	-	Tragelaphus buxtoni
GCA_006410755.1	SJYI000000000	SAMN08714502	-	Tragelaphus eurycerus
GCA_006410775.1	SJYM00000000	SAMN08714498	-	Tragelaphus imberbis
GCA_006416875.1	SJYK000000000	SAMN08714500	-	Tragelaphus oryx
GCA_006410495.1	SJXY00000000	SAMN08714495	-	Tragelaphus scriptus
GCA_006411015.1	SJYL000000000	SAMN08714499	-	Tragelaphus spekii
GCA_006410795.1	SJYU00000000	SAMN08714497	-	Tragelaphus strepsiceros
GCA_022457235.1	JAJJWJ000000000	SAMN23138054	LMD-DV	Tragulus javanicus
GCA_006408655.1	SJXW00000000	SAMN08714472	-	Tragulus kanchil

SRA Data Details

Parameter	Value
Data volume, Gbases	29,682
Data volume, Tbytes	12.89

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