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Items: 1 to 20 of 26

1.

RfaH counter-silences inhibition of transcript elongation by H-NS–StpA H-NS nucleoprotein filaments in pathogenic E. coli

Project data type: Epigenomics
Scope:
Multispecies
Landick Lab, Biochemistry, University of Wisconsin-Madison
Accession:
PRJNA873726
ID:
873726
2.

YciR, a specific 3′-phosphodiesterases, plays a role in the pathogenesis of Uropathogenic Escherichia coli CFT073

Taxonomy:
Escherichia coli CFT073
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Nankai university
Accession:
PRJNA782451
ID:
782451
3.

1. Next Generation Sequencing Assessment of the Influence of Antibiotic Exposure on Bacterial Genome using a Hollow Fiber Culture System

Project data type: Raw sequence reads
Scope:
Multispecies
FDA
Accession:
PRJNA702094
ID:
702094
4.

Establishing the global binding profile of DsdC in UPEC and NMEC

UPEC and NMEC strains expressing chromosomally FLAG-tagged DsdC were cultured in minimal medium for 3 h, spiked with D-serine for 2 h or left untreated, before harvesting for ChIP-seq

Project data type: Other
Scope:
Monoisolate
Glasgow Polyomics
Accession:
PRJEB36549
ID:
699788
5.

Establishing the global regulatory role of DsdC in UPEC and NMEC

UPEC and NMEC wild type and ΔdsdC mutants were cultured in minimal medium for 3 h, spiked with D-serine for 2 h, before harvesting for RNA-seq. DsdA was expressed to overcome growth inhibitory effects of D-serine. EHEC was also included for comparison.

Project data type: Other
Scope:
Monoisolate
Glasgow Polyomics
Accession:
PRJEB36547
ID:
699787
6.

uropathogenic ecoli transcriptome

Project data type: Raw sequence reads
Scope:
Multispecies
Nankai university
Accession:
PRJNA658061
ID:
658061
7.

The impact of genetic diversity on gene essentiality within the E. coli species.

Project data type: Genome sequencing and assembly
Scope:
Monoisolate
INSTITUT PASTEUR
Accession:
PRJEB37847
ID:
649508
8.

Widespread strain-specific distinctions in chromosomal binding dynamics of a highly conserved Escherichia coli transcription factor

Project data type: Other
Scope:
Monoisolate
Glasgow Polyomics
Accession:
PRJEB38405
ID:
648581
9.

Escherichia coli CFT073 isolate:199310

Escherichia coli CFT073 isolate:199310 Genome sequencing

Taxonomy:
Escherichia coli CFT073
Project data type: Genome sequencing
Scope:
Monoisolate
Genentech
Accession:
PRJNA624646
ID:
624646
10.

Tailoring a global iron regulon to a uropathogen

Taxonomy:
Escherichia coli CFT073
Project data type: Other
Scope:
Multiisolate
Great Lakes Bioenergy Research Center, University of Wisconsin - Madison
Accession:
PRJNA607202
ID:
607202
11.

Comparison of gene expression profiles of uropathogenic Escherichia coli CFT073 after prolonged exposure to subinhibitory concentrations of different biocides

Taxonomy:
Escherichia coli CFT073
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Technical University of Denmark
Accession:
PRJNA559278
ID:
559278
12.

Escherichia coli CFT073 isolate:PU_38

Escherichia coli CFT073 isolate:PU_38 Genome sequencing

Taxonomy:
Escherichia coli CFT073
Project data type: Genome sequencing
Scope:
Monoisolate
Rehman Medical Institute
Accession:
PRJNA387644
ID:
387644
13.

A highly conserved bacterial D-serine uptake system links host metabolism and virulence

Project data type: Other
Scope:
Monoisolate
Glasgow Polyomics
Accession:
PRJEB12065
ID:
305594
14.

The Epigenomic Landscape of Prokaryotes

Project data type: Epigenomics
Scope:
Multispecies
Rubin / Pennacchio, Genomics Division, Lawrence Berkeley National Laboratory
Accession:
PRJNA287040
ID:
287040
15.

Escherichia coli CFT073

Genome wide binding sites of NsrR in uropathogenic E.coli CFT073

Taxonomy:
Escherichia coli CFT073
Project data type: Epigenomics
Scope:
Multiisolate
Biological Sciences, University of Texas at Dallas
Accession:
PRJNA286884
ID:
286884
16.

Escherichia coli CFT073

Nitrosative stress response in uropathogenic Escherichia coli (UPEC)

Taxonomy:
Escherichia coli CFT073
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Biological Sciences, University of Texas at Dallas
Accession:
PRJNA286883
ID:
286883
17.

Escherichia coli CFT073

Escherichia coli global gene expression due ciprofloxacin challenge in laboratory medium and human serum

Taxonomy:
Escherichia coli CFT073
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Division of Infection and Pathway Medicine, University of Edinburgh
Accession:
PRJNA281753
ID:
281753
18.

Escherichia coli CFT073

Escherichia coli global gene expression due ciprofloxacin challenge in human whole blood

Taxonomy:
Escherichia coli CFT073
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Division of Infection and Pathway Medicine, University of Edinburgh
Accession:
PRJNA281752
ID:
281752
19.

Escherichia coli CFT073

Effects of Escherichia coli global gene expression due to microfluidic processing

Taxonomy:
Escherichia coli CFT073
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Division of Infection and Pathway Medicine, University of Edinburgh
Accession:
PRJNA281646
ID:
281646
20.

Transfer of Non-coding DNA Drives Regulatory Rewiring in Bacteria

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
Tel-Aviv university
Accession:
PRJNA255401
ID:
255401

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