Collembola (ID 656897) - BioProject

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Accession: PRJNA656897 ID: 656897

Collembola

Phylogeny of Entomobryoidea based on low coverage whole genome sequencing

After recovering the species whole genome, different types of molecular markers such as the mitochondrial genome, single-copy nuclear gene, and ultra-conservative components will be extracted. More...

Accession	PRJNA656897
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Godeiro NN et al., "Phylogenomics and systematics of Entomobryoidea (Collembola): marker design, phylogeny and classification.", Cladistics, 2023 Apr;39(2):101-115
Submission	Registration date: 13-Aug-2020 Nanjing Agricultural University
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	20
SRA Experiments	22
Publications
PubMed	1
Other datasets
BioSample	22
Assembly	20

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

20
20

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_027744115.1	JAHZND000000000	SAMN15806932	-	Acrocyrtus sp. NNG-2020
GCA_027743745.1	JAHZMW000000000	SAMN20255310	-	Alloscopus bannaensis
GCA_027744295.1	JAHZNB000000000	SAMN15806931	-	Callyntrura guangdongensis
GCA_027744055.1	JAHZNE000000000	SAMN15806929	-	Callyntrura sp. NNG-2020
GCA_027743765.1	JAHZMV000000000	SAMN20255311	-	Coecobrya sp. COE2
GCA_027744575.1	JAHZNL000000000	SAMN07251598	AM51	Lepidocyrtinus sp. AM51
GCA_027743805.1	JAHZMZ000000000	SAMN20256435	-	Lepidocyrtoides sp. E14
GCA_027744615.1	JAHZNK000000000	SAMN15806923	-	Lepidocyrtus cf. nigrosetosus NNG-2020
GCA_027744475.1	JAHZNJ000000000	SAMN15806924	-	Lepidocyrtus cf. sotoi NNG-2020
GCA_027744375.1	JAHZNG000000000	SAMN15806934	-	Orchesellides sinensis
GCA_027744595.1	JAITYZ000000000	SAMN15806933	-	Paronellides praefectus
GCA_027743725.1	JAHZMU000000000	SAMN20255312	-	Rambutsinella grinnellia
GCA_027743895.1	JAHZMX000000000	SAMN20255314	-	Seira dowlingi
GCA_027744415.1	JAHZNI000000000	SAMN15806926	-	Seira ritae
GCA_027743915.1	JAHZMY000000000	SAMN20256436	-	Seira sanloemensis
GCA_027743785.1	JAHZMT000000000	SAMN20255313	-	Sinhomidia bicolor
GCA_027743935.1	JAHZNA000000000	SAMN15962574	-	Sinodicranocentrus sp. ZH6
GCA_027744215.1	JAHZNF000000000	SAMN15806927	-	Troglopedetes dispersus
GCA_027744355.1	JAHZNH000000000	SAMN15962573	-	Tyrannoseira gladiata
GCA_027744095.1	JAHZNC000000000	SAMN15806930	-	Zhuqinia jingwanae

SRA Data Details

Parameter	Value
Data volume, Gbases	238
Data volume, Tbytes	0.13

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Collembola

Phylogeny of Entomobryoidea based on low coverage whole genome sequencing

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