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Accession: PRJNA1046055 ID: 1046055

The global diversification of the lucinid chemosymbiosis

Comparative genomic analyses of chemosymbiotic bacteria associated with lucinids from diverse habitats across the globe.
AccessionPRJNA1046055
Data TypeGenome sequencing
ScopeMultispecies
PublicationsSudo M et al., "SoxY gene family expansion underpins adaptation to diverse hosts and environments in symbiotic sulfide oxidizers.", mSystems, 2024 Jun 18;9(6):e0113523
SubmissionRegistration date: 28-Nov-2023
University of Vienna
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)71
SRA Experiments68
Publications
PubMed1
PMC1
Other datasets
BioSample139
Assembly71
Assembly details:
Assembly levelNumber of Assemblies
71
71
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_040506495.1ScaffoldJBEVWS000000000SAMN38471284
1PA
GCA_040506525.1ScaffoldJBEVWR000000000SAMN38471283
20ELBAFRAG
GCA_040506475.1ScaffoldJBEVWT000000000SAMN38471285
4PFRAG1
GCA_040506445.1ScaffoldJBEVWU000000000SAMN38471286
6PFRAG1
GCA_040506395.1ScaffoldJBEVWV000000000SAMN38471287
6PFRAG5
GCA_040506415.1ScaffoldJBEVWW000000000SAMN38471288
6PFRAG7
GCA_040506425.1ScaffoldJBEVWX000000000SAMN38471289
PURPLELP
GCA_040507095.1ScaffoldJBEVVO000000000SAMN38471254
L111
GCA_040506375.1ScaffoldJBEVWY000000000SAMN38471290
L143
GCA_040506355.1ScaffoldJBEVXB000000000SAMN38471293
L165
GCA_040506335.1ScaffoldJBEVXA000000000SAMN38471292
L167
GCA_040506315.1ScaffoldJBEVWZ000000000SAMN38471291
L144
GCA_040507165.1ScaffoldJBEVVL000000000SAMN38471251
L097
GCA_040506785.1ScaffoldJBEVWE000000000SAMN38471270
4PLUC2
GCA_040506535.1ScaffoldJBEVWO000000000SAMN38471280
6PLUC8
GCA_040506515.1ScaffoldJBEVWQ000000000SAMN38471282
THAU1
GCA_040506695.1ScaffoldJBEVWF000000000SAMN38471271
4PLUCS
GCA_040506775.1ScaffoldJBEVWC000000000SAMN38471268
INDO1 L198
GCA_040507115.1ScaffoldJBEVVN000000000SAMN38471253
CTENA1 L110
GCA_040506825.1ScaffoldJBEVWB000000000SAMN38471267
INDO1 L196
GCA_040506815.1ScaffoldJBEVWD000000000SAMN38471269
CTENA5 L158
GCA_040507065.1ScaffoldJBEVVP000000000SAMN38471255
CTENA3 L117
GCA_040507055.1ScaffoldJBEVVQ000000000SAMN38471256
CTENA4 L114
GCA_040507035.1ScaffoldJBEVVR000000000SAMN38471257
CTENA7 L123
GCA_040507005.1ScaffoldJBEVVS000000000SAMN38471258
CTENA6 L123
GCA_040506975.1ScaffoldJBEVVT000000000SAMN38471259
CTENA5 DIVAS
GCA_040506195.1ScaffoldJBEVXH000000000SAMN38471299
CTENA5 L149
GCA_040506155.1ScaffoldJBEVXI000000000SAMN38471300
CTENA1 L147
GCA_040506115.1ScaffoldJBEVXJ000000000SAMN38471301
CTENA4 L148
GCA_040506055.1ScaffoldJBEVXN000000000SAMN38471305
CTENA5
GCA_040506015.1ScaffoldJBEVXO000000000SAMN38471306
CTENA5 12EA1
GCA_040506025.1ScaffoldJBEVXQ000000000SAMN38471308
CTENA5 CR6
GCA_040505995.1ScaffoldJBEVXR000000000SAMN38471309
CTENA5 HO10
GCA_040505935.1ScaffoldJBEVXS000000000SAMN38471310
CTENA5 TH1
GCA_040506075.1ScaffoldJBEVXP000000000SAMN38471307
CTENA5 8BS1
GCA_040507295.1ScaffoldJBEVVF000000000SAMN38471245
CTENA4 3PP
GCA_040507225.1ScaffoldJBEVVG000000000SAMN38471246
AUST1 L219
GCA_040507245.1ScaffoldJBEVVH000000000SAMN38471247
AUST2 L127
GCA_040506235.1ScaffoldJBEVXE000000000SAMN38471296
4PDIV1
GCA_040506255.1ScaffoldJBEVXF000000000SAMN38471297
4PDIVS1
GCA_040506215.1ScaffoldJBEVXG000000000SAMN38471298
6PDIVS
GCA_040506705.1ScaffoldJBEVWG000000000SAMN38471272
6PLUC1
GCA_040506725.1ScaffoldJBEVWH000000000SAMN38471273
6PLUC10
GCA_040506715.1ScaffoldJBEVWI000000000SAMN38471274
6PLUC2
GCA_040506675.1ScaffoldJBEVWJ000000000SAMN38471275
6PLUC3
GCA_040506625.1ScaffoldJBEVWK000000000SAMN38471276
6PLUC4
GCA_040506635.1ScaffoldJBEVWL000000000SAMN38471277
6PLUC5
GCA_040506615.1ScaffoldJBEVWM000000000SAMN38471278
6PLUC6
GCA_040506595.1ScaffoldJBEVWN000000000SAMN38471279
6PLUC7
GCA_040506575.1ScaffoldJBEVWP000000000SAMN38471281
6PLUC9
GCA_040506275.1ScaffoldJBEVXD000000000SAMN38471295
DIVDIV
GCA_040506095.1ScaffoldJBEVXM000000000SAMN38471304
L084R
GCA_040506295.1ScaffoldJBEVXC000000000SAMN38471294
LLP2
GCA_040507215.1ScaffoldJBEVVJ000000000SAMN38471249
L070
GCA_040507195.1ScaffoldJBEVVI000000000SAMN38471248
L071
GCA_040507155.1ScaffoldJBEVVK000000000SAMN38471250
L076
GCA_040507235.1ScaffoldJBEVVE000000000SAMN38471244
L015
GCA_040507105.1ScaffoldJBEVVM000000000SAMN38471252
L069
GCA_040505975.1ScaffoldJBEVXW000000000SAMN38471314
2 TCF2
GCA_040505955.1ScaffoldJBEVXT000000000SAMN38471311
1_1 TCF1
GCA_040505915.1ScaffoldJBEVXV000000000SAMN38471313
2 TCF1
GCA_040505895.1ScaffoldJBEVXU000000000SAMN38471312
1_2 TCF2
GCA_040506175.1ScaffoldJBEVXL000000000SAMN38471303
L031
GCA_040506135.1ScaffoldJBEVXK000000000SAMN38471302
L054
GCA_040506805.1ScaffoldJBEVWA000000000SAMN38471266
OVUMBEN
GCA_040506875.1ScaffoldJBEVVZ000000000SAMN38471265
L059
GCA_040506945.1ScaffoldJBEVVV000000000SAMN38471261
divoraustram26
GCA_040506885.1ScaffoldJBEVVX000000000SAMN38471263
L067
GCA_040506905.1ScaffoldJBEVVW000000000SAMN38471262
L066
GCA_040506895.1ScaffoldJBEVVY000000000SAMN38471264
3502E
GCA_040506995.1ScaffoldJBEVVU000000000SAMN38471260
divoraustram25
SRA Data Details
ParameterValue
Data volume, Gbases288
Data volume, Tbytes0.11

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