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Accession: PRJNA312217 ID: 312217

Salmonella enterica

GenomeTrakr Project: New Mexico State University, Food Safety Laboratory

See Genome Information for Salmonella enterica
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
AccessionPRJNA312217
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 6-Dec-2018
FDA
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)660
SRA Experiments688
Other datasets
BioSample687
Assembly660
Assembly details:
Assembly levelNumber of Assemblies
660
660
AssemblyLevelWGSBioSampleStrainTaxonomy
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_005963825.1ContigAAEESB000000000SAMN04488352
NMSU-00263
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JWC-7161
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JWC-7166
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JWC-7141
GCA_005538955.1ContigAADDKN000000000SAMN09851195
JWC-7148
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JWC-7144
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JWC-7124
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JWC-7119
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JWC-7104
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JWC-7201
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JWC-7203
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JWC-7164
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JWC-7138
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JWC-7181
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JWC-7160
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JWC-7158
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JWC-7178
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JWC-7151
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JWC-7142
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JWC-7184
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NMSU-00411
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JWC-7193
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JWC-7122
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JWC-7110
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JWC-7182
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JWC-7190
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JWC-7186
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JWC-7134
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JWC-7200
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JWC-7192
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NMSU-00267
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JWC-7202
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JWC-7174
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JWC-7185
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JWC-7114
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JWC-7179
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JWC-7100
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JWC-7175
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JWC-7154
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JWC-7129
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JWC-7145
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NMSU-KFB83
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NMSU-KFB95
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NMSU-KFB23
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NMSU-DG132
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NMSU-KFB131
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NMSU-KFB84
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NMSU-SA2210
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NMSU-KFB107
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NMSU-KFB28
GCA_024441835.1ContigABHGTP000000000SAMN29945697
KFB21
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KFB74
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KFB16
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KFB103
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KFB102
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KFB117
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KFB106
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KFB111
GCA_024442015.1ContigABHGTY000000000SAMN29945689
KFB110
GCA_024441995.1ContigABHGTV000000000SAMN29945686
KFB104
GCA_024441975.1ContigABHGTW000000000SAMN29945687
KFB105
GCA_024441935.1ContigABHGTR000000000SAMN29945698
KFB24
GCA_024441955.1ContigABHGTU000000000SAMN29945702
KFB9
GCA_024441915.1ContigABHGTN000000000SAMN29945695
KFB15
GCA_024441895.1ContigABHGTQ000000000SAMN29945699
KFB63
GCA_024441875.1ContigABHGTT000000000SAMN29945701
KFB82
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KFB123
GCA_024444135.1ContigABHGUB000000000SAMN29945692
KFB121
GCA_024444215.1ContigABHGUC000000000SAMN29945693
KFB122
GCA_024197575.1ContigABGZZL000000000SAMN29600175
KF39
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KFB44
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KF34
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KFB27
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KFB48
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KFB20
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KFB13
GCA_024200005.1ContigABGZZP000000000SAMN29600170
KFB14
GCA_024200015.1ContigABGZZO000000000SAMN29600171
KFB17
GCA_006897165.1ContigAAGOAL000000000SAMN04488353
NMSU-00264
GCA_006893825.1ContigAAGOAJ000000000SAMN04488355
NMSU-00266
GCA_006897585.1ContigAAGOBA000000000SAMN04488354
NMSU-00265
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JWC-7197
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JWC-7159
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JWC-0930-17A
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JWC-0924-23A
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JWC-1007-2A
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GCA_019376355.1ContigABBMWY000000000SAMN20432047
JWC-1021-7RV-CAA18
GCA_019376335.1ContigABBMXJ000000000SAMN20432045
JWC-1021-5RV-CAA15
GCA_019376315.1ContigABBMXB000000000SAMN20432043
JWC-1021-11TT-CAB22
GCA_019376295.1ContigABBMXC000000000SAMN20432044
JWC-1021-12RV-CAA28
GCA_019376275.1ContigABBMXF000000000SAMN20432046
JWC-1021-5TT-CAB7
GCA_019376235.1ContigABBMXE000000000SAMN20432050
JWC-1021-8TT-CAB15
GCA_019376215.1ContigABBMXH000000000SAMN20432042
JWC-1016-7TT-CAA23
GCA_019376195.1ContigABBMWS000000000SAMN20398462
LZ65_002
GCA_019386515.1ContigABBNPE000000000SAMN20398466
LZ71_002
GCA_019386495.1ContigABBNPD000000000SAMN20398465
LZ67_003
GCA_019386475.1ContigABBNPC000000000SAMN20398464
LZ67_002
GCA_019386455.1ContigABBNPB000000000SAMN20398463
LZ67_001
GCA_019386335.1ContigABBNPA000000000SAMN20398461
LZ65_001
GCA_019386315.1ContigABBNOW000000000SAMN20398460
LZ61_004
GCA_019386295.1ContigABBNOY000000000SAMN20398459
LZ61_003
GCA_019386275.1ContigABBNOZ000000000SAMN20398474
LZ82_003
GCA_019386255.1ContigABBNOV000000000SAMN20398473
LZ82_001
GCA_019386235.1ContigABBNOX000000000SAMN20398472
LZ79_003
GCA_019386215.1ContigABBNOU000000000SAMN20398471
LZ79_002
GCA_019386195.1ContigABBNOP000000000SAMN20398458
LZ61_001
GCA_019386035.1ContigABBNOQ000000000SAMN20398467
LZ73
GCA_019386015.1ContigABBNOR000000000SAMN20398468
LZ76_002
GCA_019385995.1ContigABBNOT000000000SAMN20398469
LZ76_003
GCA_019385975.1ContigABBNOS000000000SAMN20398470
LZ79_001
GCA_019149565.1ContigABBDUG000000000SAMN20080829
LZ18_002
GCA_019148555.1ContigABBDTV000000000SAMN20080824
LZ14_001
GCA_019148535.1ContigABBDTW000000000SAMN20080819
LZ7_003
GCA_019145715.1ContigABBDSP000000000SAMN20080831
LZ18_004
GCA_019145695.1ContigABBDSN000000000SAMN20080813
LZ2_002
GCA_019145655.1ContigABBDSQ000000000SAMN20080830
LZ18_003
GCA_019145635.1ContigABBDSO000000000SAMN20080812
LZ2_001
GCA_019145405.1ContigABBDSE000000000SAMN20080828
LZ18_001
GCA_019145395.1ContigABBDSD000000000SAMN20080817
LZ7_001
GCA_019145115.1ContigABBDRV000000000SAMN20080818
LZ7_002
GCA_019145095.1ContigABBDRZ000000000SAMN20080816
LZ4_003
GCA_019145075.1ContigABBDRW000000000SAMN20080827
LZ14_004
GCA_019145035.1ContigABBDRX000000000SAMN20080826
LZ14_003
GCA_019145135.1ContigABBDSA000000000SAMN20080821
LZ10_002
GCA_019144715.1ContigABBDRB000000000SAMN20080814
LZ4_001
GCA_019144695.1ContigABBDRC000000000SAMN20080820
LZ10_001
GCA_019144675.1ContigABBDRD000000000SAMN20080815
LZ4_002
GCA_019144435.1ContigABBDQP000000000SAMN20080825
LZ14_002
GCA_019144395.1ContigABBDQR000000000SAMN20080823
LZ_004
GCA_019161175.1ContigABBEPY000000000SAMN20080822
LZ10_003
GCA_019645115.1ContigABBYOS000000000SAMN20811197
LZ88_002
GCA_019645095.1ContigABBYOX000000000SAMN20811212
LZ106_003
GCA_019645075.1ContigABBYOY000000000SAMN20811196
LZ88_001
GCA_019645055.1ContigABBYOR000000000SAMN20811211
LZ106_001
GCA_019645015.1ContigABBYOQ000000000SAMN20811209
LZ102_002
GCA_019645025.1ContigABBYPB000000000SAMN20811208
LZ102_001
GCA_019644675.1ContigABBYOJ000000000SAMN20811198
LZ88_003
GCA_019644495.1ContigABBYOB000000000SAMN20811205
LZ99_001
GCA_019644455.1ContigABBYNX000000000SAMN20811207
LZ99_003
GCA_019644435.1ContigABBYNW000000000SAMN20811206
LZ99_002
GCA_019644415.1ContigABBYNK000000000SAMN20811204
LZ96_002
GCA_019644395.1ContigABBYNI000000000SAMN20811203
LZ96_001
GCA_019644375.1ContigABBYNJ000000000SAMN20811202
LZ95
GCA_019644355.1ContigABBYNM000000000SAMN20811199
LZ92_001
GCA_019644335.1ContigABBYNN000000000SAMN20811201
LZ92_003
GCA_019644315.1ContigABBYNL000000000SAMN20811213
LZ106_004
GCA_019644295.1ContigABBYNH000000000SAMN20811200
LZ92_002
GCA_019644735.1ContigABBYOM000000000SAMN20811210
LZ102_003
GCA_018393275.1ContigABAMKY000000000SAMN19233543
JWC-1008-12TT-CAB17
GCA_018393235.1ContigABAMLL000000000SAMN19233555
JWC-CCBP-5L
GCA_018393215.1ContigABAMKU000000000SAMN19233546
JWC-1015-3RV-CAA1
GCA_018393195.1ContigABAMLK000000000SAMN19233551
JWC-1023-2H
GCA_018393155.1ContigABAMKS000000000SAMN19233539
JWC-1002-3RV-CA34
GCA_018393115.1ContigABAMLN000000000SAMN19233549
JWC-1016-9A
GCA_018393095.1ContigABAMKR000000000SAMN19233548
JWC-1016-14RV-CAB35
GCA_018391225.1ContigABAMHF000000000SAMN19233554
JWC-AD-1
GCA_018391355.1ContigABAMGZ000000000SAMN19233544
JWC-1008-2RV-CAA8
GCA_018391335.1ContigABAMGS000000000SAMN19233541
JWC-1007-13TT-CA47
GCA_018391315.1ContigABAMGP000000000SAMN19233556
JWC-RRAP-3L
GCA_018391295.1ContigABAMGQ000000000SAMN19233540
JWC-1007-10TT-CA38
GCA_018403935.1ContigABAMPE000000000SAMN19233552
JWC-1023-4A
GCA_018404255.1ContigABAMPV000000000SAMN19233538
JWC-1001-1TT-CAA41
GCA_018404215.1ContigABAMPW000000000SAMN19233542
JWC-1007-8TT-CA30
GCA_018404195.1ContigABAMPY000000000SAMN19233553
JWC-7223
GCA_018404055.1ContigABAMPL000000000SAMN19233550
JWC-1023-2A
GCA_018478965.1ContigABAOHS000000000SAMN19094195
JWC-1002-17A
GCA_018478945.1ContigABAOHQ000000000SAMN19094194
JWC-1001-3I
GCA_018478925.1ContigABAOHO000000000SAMN19094191
JWC-0924-21C
GCA_018478905.1ContigABAOFV000000000SAMN19094190
JWC-0924-21A
GCA_018478885.1ContigABAOHT000000000SAMN19094193
JWC-1001-3D
GCA_018478865.1ContigABAOHV000000000SAMN19094192
JWC-0924-22A
GCA_018478815.1ContigABAOFW000000000SAMN19094204
JWC-1023-1H
GCA_018478805.1ContigABAOFY000000000SAMN19094202
JWC-1014-3RV-CAB2
GCA_018478785.1ContigABAOFX000000000SAMN19094188
JWC-0924-11A
GCA_018478765.1ContigABAOGA000000000SAMN19094189
JWC-0924-11F
GCA_018478745.1ContigABAOFZ000000000SAMN19094203
JWC-1023-1A
GCA_018478725.1ContigABAOGB000000000SAMN19094201
JWC-1014-14RV-CAB16
GCA_018478705.1ContigABAOGP000000000SAMN19094197
JWC-1008-11TT-CAB16
GCA_018478685.1ContigABAOGR000000000SAMN19094199
JWC-1009-7TT-CAC48
GCA_018478665.1ContigABAOGF000000000SAMN19094198
JWC-1008-13RV-CAA31
GCA_018478645.1ContigABAOGG000000000SAMN19094200
JWC-1014-13TT-CAA31
GCA_018478625.1ContigABAOGD000000000SAMN19094187
JWC-0924-09C
GCA_018478605.1ContigABAOGJ000000000SAMN19094196
JWC-1008-11RV-CAA23
GCA_018478585.1ContigABAOFP000000000SAMN19094186
JWC-0924-09A
GCA_019089105.1ContigABBCFL000000000SAMN19974695
JWC-1001-10RV-CAA11
GCA_019086165.1ContigABBCAA000000000SAMN19974689
JWC-0930-10TT-CA10
GCA_019085085.1ContigABBBXE000000000SAMN19974692
JWC-0930-7TT-CA17
GCA_019084785.1ContigABBBXJ000000000SAMN19974694
JWC-0930-9TT-CA16
GCA_019084745.1ContigABBBXI000000000SAMN19974690
JWC-0930-6RV-CA45
GCA_019085245.1ContigABBBYG000000000SAMN19974693
JWC-0930-9RV-CA39
GCA_019085225.1ContigABBBYI000000000SAMN19974688
JWC-0930-10RV-CA36
GCA_019085205.1ContigABBBYM000000000SAMN19974691
JWC-0930-7RV-CAA1
GCA_018255115.1ContigABAIVZ000000000SAMN18986996
JWC-1016-18C
GCA_018255155.1ContigABAIWA000000000SAMN18986997
JWC-1016-21C
GCA_018255055.1ContigABAIVM000000000SAMN18986992
JWC-1008-4RV-CAA14
GCA_018255095.1ContigABAIWB000000000SAMN18986995
JWC-1016-18A
GCA_018255075.1ContigABAIWD000000000SAMN18986994
JWC-1016-13TT-CAA37
GCA_018255015.1ContigABAIVQ000000000SAMN18986991
JWC-1008-3TT-CAB3
GCA_018255035.1ContigABAIVV000000000SAMN18986993
JWC-1009-14RV-CAC29
GCA_018254995.1ContigABAIVP000000000SAMN18987008
JWC-7315
GCA_018254975.1ContigABAIVR000000000SAMN18987007
JWC-1008-6TT-CAB10
GCA_018254955.1ContigABAIVO000000000SAMN18986990
JWC-1001-9RV-CAA15
GCA_018254895.1ContigABAIVN000000000SAMN18987005
JWC-1008-1RV-CAA4
GCA_018254915.1ContigABAIVU000000000SAMN18987004
JWC-1007-9TT-CA34
GCA_018254935.1ContigABAIVS000000000SAMN18987006
JWC-1008-3RV-CAA11
GCA_018254875.1ContigABAIVL000000000SAMN18987003
JWC-1007-9RV-CA8
GCA_018254815.1ContigABAIVG000000000SAMN18986999
JWC-1016-9D
GCA_018254835.1ContigABAIVK000000000SAMN18987000
JWC-1002-10TT-CA5
GCA_018254855.1ContigABAIUX000000000SAMN18987002
JWC-1007-2TT-CA28
GCA_018254795.1ContigABAIVC000000000SAMN18987001
JWC-1007-12TT-CA44
GCA_018254775.1ContigABAIVF000000000SAMN18986998
JWC-1016-6A
GCA_018254715.1ContigABAIVI000000000SAMN18986989
JWC-1001-4RV-CAA17
GCA_018254755.1ContigABAIVD000000000SAMN18986988
JWC-1001-2RV-CAA27
GCA_018009775.1ContigABAAZZ000000000SAMN18751518
JWC-1016-8TT-CAA25
GCA_018009755.1ContigABAAYY000000000SAMN18751516
JWC-1016-6TT-CAA20
GCA_018009735.1ContigABAAZE000000000SAMN18751515
JWC-1016-6RV-CAB14
GCA_018009715.1ContigABAAZB000000000SAMN18751514
JWC-1016-5TT-CAA13
GCA_018009695.1ContigABAAYZ000000000SAMN18751512
JWC-1016-3TT-CAA10
GCA_018009675.1ContigABAAYX000000000SAMN18751522
JWC-1021-4TT-CAB48
GCA_018009655.1ContigABAAZD000000000SAMN18751513
JWC-1016-5RV-CAB9
GCA_018009635.1ContigABAAZF000000000SAMN18751523
JWC-1022-01RV-CAB4
GCA_018009615.1ContigABAAZC000000000SAMN18751511
JWC-1016-2TT-CAA3
GCA_018009595.1ContigABAAYW000000000SAMN18751521
JWC-1021-4RV-CAA11
GCA_018009575.1ContigABAAYU000000000SAMN18751519
JWC-1021-2RV-CAA3
GCA_018009555.1ContigABAAYV000000000SAMN18751520
JWC-1021-3RV-CAA5
GCA_018009535.1ContigABAAYS000000000SAMN18751510
JWC-1016-16RV-CAB39
GCA_018009515.1ContigABAAYT000000000SAMN18751509
JWC-1016-14TT-CAA42
GCA_018010215.1ContigABABAA000000000SAMN18751517
JWC-1016-8RV-CAB17
GCA_017754325.1ContigAAZTRU000000000SAMN18365625
JWC-7300
GCA_017754305.1ContigAAZTRW000000000SAMN18365623
JWC-7297
GCA_017754525.1ContigAAZTRY000000000SAMN18365622
JWC-7296
GCA_017754505.1ContigAAZTRT000000000SAMN18365618
JWC-7263
GCA_017754485.1ContigAAZTRX000000000SAMN18365621
JWC-7295
GCA_017754465.1ContigAAZTRQ000000000SAMN18365619
JWC-7279
GCA_017754445.1ContigAAZTRR000000000SAMN18365616
JWC-7258
GCA_017754425.1ContigAAZTRS000000000SAMN18365626
JWC-7306
GCA_017754405.1ContigAAZTRV000000000SAMN18365617
JWC-7262
GCA_017754385.1ContigAAZTRO000000000SAMN18365624
JWC-7299
GCA_017754365.1ContigAAZTRP000000000SAMN18365615
JWC-7250
GCA_017754345.1ContigAAZTRN000000000SAMN18365614
JWC-7246
GCA_017812095.1ContigAAZVSN000000000SAMN18620623
JWC-7318
GCA_017823955.1ContigAAZWAE000000000SAMN18620618
JWC-1016-13RV-CAB32
GCA_017823915.1ContigAAZWAG000000000SAMN18620617
JWC-1016-11RV-CAB25
GCA_017823835.1ContigAAZWAB000000000SAMN18620622
JWC-7316At
GCA_017807535.1ContigAAZVKX000000000SAMN18365620
JWC-7291
GCA_017809175.1ContigAAZVNY000000000SAMN18620615
JWC-1015-4RV-CAA7
GCA_017809075.1ContigAAZVNT000000000SAMN18620626
JWC-7342
GCA_017811505.1ContigAAZVSA000000000SAMN18620620
JWC-7308
GCA_017823935.1ContigAAZWAO000000000SAMN18620619
JWC-7307
GCA_017823895.1ContigAAZWAK000000000SAMN18620616
JWC-1015-6TT-CAA38
GCA_017823875.1ContigAAZWAU000000000SAMN18620614
JWC-1015-21RV-CAA20
GCA_017823855.1ContigAAZWAT000000000SAMN18620613
JWC-1015-20TT-CAB14
GCA_017823815.1ContigAAZWAP000000000SAMN18620627
JWC-7343
GCA_017823795.1ContigAAZWAQ000000000SAMN18620624
JWC-7318At
GCA_017823755.1ContigAAZWAH000000000SAMN18620621
JWC-7310
GCA_017823695.1ContigAAZWAR000000000SAMN18620611
JWC-1015-18RV-CAA10
GCA_017823775.1ContigAAZWAS000000000SAMN18620625
JWC-7319
GCA_017823715.1ContigAAZWAI000000000SAMN18620612
JWC-1015-20RV-CAA16
GCA_017238495.1ContigAAZHMI000000000SAMN17497227
JWC-AD-2
GCA_017238435.1ContigAAZHMG000000000SAMN17497226
NMSU-SA38A
GCA_017068735.1ContigAAZAQL000000000SAMN17835681
JWC-1016-6D
GCA_017068675.1ContigAAZAPZ000000000SAMN17835680
JWC-1016-21A
SRA Data Details
ParameterValue
Data volume, Gbases245
Data volume, Tbytes0.14

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