Panicum virgatum strain:AP13 (ID 40657) - BioProject

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Accession: PRJNA40657 ID: 40657

Panicum virgatum strain:AP13 (switchgrass)

See Genome Information for Panicum virgatum

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7321 additional projects are related by organism.

DOE Joint Genome Institute is in the process of sequencing the genome of switchgrass using whole genome shotgun methodology.

Accession	PRJNA40657
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Panicum virgatum[Taxonomy ID: 38727] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes; Panicum virgatum
Publications	Lovell JT et al., "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.", Nature, 2021 Feb;590(7846):438-444 Young HA et al., "Chloroplast genome variation in upland and lowland switchgrass.", PLoS One, 2011;6(8):e23980
Submission	Registration date: 5-Oct-2020 - DOE Joint Genome Institute - JGI-PGF
Locus Tag Prefix	PVAP13

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1108
WGS master	1
Capillary Traces (Trace Archive)	1
Protein Sequences	129942
Publications
PubMed	2
PMC	2
Other datasets
BioSample	1
Assembly	1

Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCA_016808335.1	Chromosome	JABWAI000000000	18	SAMN00760928	Panicum virgatum

Parameter	Value
Data volume, Gbases	1,183
Data volume, Tbytes	2.17

Related RefSeq Project

PRJNA704030 : Panicum virgatum strain:AP13 RefSeq Genome