ID 601986 - BioProject

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Accession: PRJNA601986 ID: 601986

Pythium whole genome sequencing

Whole genome sequencing was performed on a diverse set of Pythium species

Accession	PRJNA601986
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Nguyen HDT et al., "Whole genome sequencing and phylogenomic analysis show support for the splitting of genus Pythium.", Mycologia, 2022 May-Jun;114(3):501-515
Submission	Registration date: 17-Jan-2020 Agriculture and Agri-Food Canada
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	109
SRA Experiments	109
Publications
PubMed	1
Other datasets
BioSample	109
Assembly	109

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

109
109

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_023337935.1	JAADXR000000000	SAMN13878536	CBS 285.31	Elongisporangium anandrum
GCA_023336395.1	JAADXA000000000	SAMN13878561	CBS 406.72	Elongisporangium dimorphum
GCA_023335875.1	JAADVW000000000	SAMN13878612	CBS 845.68	Elongisporangium prolatum
GCA_023335835.1	JAADVQ000000000	SAMN13878621	CBS 122490	Elongisporangium senticosum
GCA_023334555.1	JAADVF000000000	SAMN13878636	CBS 157.69	Elongisporangium undulatum
GCA_023334355.1	JAASGV000000000	SAMN13878532	CBS 110198	Globisporangium abappressorium
GCA_023334365.1	JAASGU000000000	SAMN13878533	CBS 337.29	Globisporangium acanthophoron
GCA_023334315.1	JAASGT000000000	SAMN13878534	CBS 139279	Globisporangium alternatum
GCA_023337805.1	JAADXK000000000	SAMN13878544	CBS 139569	Globisporangium barbulae
GCA_023337595.1	JAADXH000000000	SAMN13878548	CBS 124059	Globisporangium camurandrum
GCA_023334305.1	JAASGQ000000000	SAMN13878549	CBS 112353	Globisporangium canariense
GCA_023334275.1	JAASGP000000000	SAMN13878551	CBS 122659	Globisporangium carolinianum
GCA_023334245.1	JAASGO000000000	SAMN13878552	CBS 133716	Globisporangium cederbergense
GCA_023337535.1	JAADXD000000000	SAMN13878555	CBS 118731	Globisporangium cryptoirregulare
GCA_023334255.1	JAASGN000000000	SAMN13878557	CBS 218.94	Globisporangium cylindrosporum
GCA_023334215.1	JAASGM000000000	SAMN13878558	CBS 675.85	Globisporangium cystogenes
GCA_023334175.1	JAASGL000000000	SAMN13878559	CBS 752.96	Globisporangium debaryanum
GCA_023336405.1	JAADWX000000000	SAMN13878564	CBS 281.64	Globisporangium echinulatum
GCA_023334195.1	JAASGK000000000	SAMN13878565	CBS 124057	Globisporangium emineosum
GCA_023334135.1	JAASGJ000000000	SAMN13878566	CBS 505.80	Globisporangium erinaceum
GCA_023334155.1	JAASGH000000000	SAMN13878572	CBS 450.67	Globisporangium heterothallicum
GCA_023336235.1	JAADWQ000000000	SAMN13878576	CBS 250.28	Globisporangium irregulare
GCA_023336215.1	JAADWP000000000	SAMN13878577	CBS 156.64	Globisporangium iwayamae
GCA_023336175.1	JAADWN000000000	SAMN13878579	CBS 113342	Globisporangium lucens
GCA_023336125.1	JAADWK000000000	SAMN13878582	CBS 251.28	Globisporangium mamillatum
GCA_023334115.1	JAASGD000000000	SAMN13878585	CBS 101356	Globisporangium megalacanthum
GCA_023334085.1	JAASGC000000000	SAMN13878586	CBS 528.74	Globisporangium middletonii
GCA_023335995.1	JAADWH000000000	SAMN13878590	CBS 779.96	Globisporangium nagaii
GCA_023334105.1	JAASGA000000000	SAMN13878591	CBS 102274	Globisporangium nodosum
GCA_023334075.1	JAASFZ000000000	SAMN13878592	CBS 808.96	Globisporangium nunn
GCA_023334035.1	JAASFY000000000	SAMN13878593	CBS 315.81	Globisporangium okanoganense
GCA_023334055.1	JAASFX000000000	SAMN13878596	CBS 112350	Globisporangium ornacarpum
GCA_023334005.1	JAASFW000000000	SAMN13878598	CBS 376.72	Globisporangium orthogonon
GCA_023334015.1	JAASFV000000000	SAMN13878600	CBS 698.83	Globisporangium paddicum
GCA_023333955.1	JAASFU000000000	SAMN13878601	CBS 157.64	Globisporangium paroecandrum
GCA_023333885.1	JAASFT000000000	SAMN13878602	CBS 225.88	Globisporangium parvum
GCA_023333865.1	JAASFS000000000	SAMN13878605	CBS 674.85	Globisporangium perplexum
GCA_023333845.1	JAASFQ000000000	SAMN13878610	CBS 118203	Globisporangium polare
GCA_023333825.1	JAASFP000000000	SAMN13878614	CBS 217.94	Globisporangium radiosum
GCA_023333815.1	JAASFO000000000	SAMN13878615	CBS 122440	Globisporangium recalcitrans
GCA_023333795.1	JAASFN000000000	SAMN13878617	CBS 112356	Globisporangium rhizosaccharum
GCA_023335675.1	JAADVP000000000	SAMN13878622	CBS 119359	Globisporangium solare
GCA_023335655.1	JAADVO000000000	SAMN13878624	CBS 122645	Globisporangium spiculum
GCA_023335535.1	JAADVN000000000	SAMN13878625	CBS 275.67	Globisporangium spinosum
GCA_023335435.1	JAADVM000000000	SAMN13878626	CBS 462.48	Globisporangium splendens
GCA_023334975.1	JAADVK000000000	SAMN13878628	CBS 453.67	Globisporangium sylvaticum
GCA_023333735.1	JAASFL000000000	SAMN13878629	CBS 122491	Globisporangium takayamanum
GCA_023334565.1	JAADVG000000000	SAMN13878634	CBS 219.65	Globisporangium ultimum var. sporangiiferum
GCA_023333755.1	JAASFJ000000000	SAMN13878635	CBS 518.77	Globisporangium uncinulatum
GCA_023333705.1	JAASFI000000000	SAMN13878639	CBS 119168	Globisporangium viniferum
GCA_023333695.1	JAASFH000000000	SAMN13878641	CBS 142324	Globisporangium yorkense
GCA_023338225.1	JAADYK000000000	SAMN13878512	CBS 679.84	Halophytophthora batemanensis
GCA_023338205.1	JAADYJ000000000	SAMN13878513	CBS 680.84	Halophytophthora polymorphica
GCA_023338185.1	JAADYI000000000	SAMN13878514	CBS 127285	Lagenidium sp. CBS 127285
GCA_023338125.1	JAADYH000000000	SAMN13878515	CBS 137195	Phytopythium aichiense
GCA_023338115.1	JAADYG000000000	SAMN13878516	CBS 551.88	Phytopythium boreale
GCA_023334415.1	JAASGX000000000	SAMN13878517	CBS 259.30	Phytopythium chamaehyphon
GCA_023336425.1	JAADXC000000000	SAMN13878556	CBS 748.96	Phytopythium cucurbitacearum (nom. inval.)
GCA_023338175.1	JAADYF000000000	SAMN13878518	CBS 123040	Phytopythium delawarense
GCA_023338155.1	JAADYE000000000	SAMN13878519	CBS 286.31	Phytopythium helicoides
GCA_023338135.1	JAADYC000000000	SAMN13878521	ATCC 66501	Phytopythium kandeliae
GCA_023338075.1	JAADYB000000000	SAMN13878522	CBS 118360	Phytopythium litorale
GCA_023338055.1	JAADXZ000000000	SAMN13878524	CBS 124523	Phytopythium mirpurense
GCA_023338065.1	JAADXY000000000	SAMN13878525	CBS 111349	Phytopythium montanum
GCA_023338025.1	JAADXX000000000	SAMN13878526	CBS 292.37	Phytopythium oedochilum
GCA_023337975.1	JAADXW000000000	SAMN13878527	CBS 768.73	Phytopythium ostracodes
GCA_023334395.1	JAASGW000000000	SAMN13878528	CBS 124518	Phytopythium sindhum
GCA_023337965.1	JAADXV000000000	SAMN13878529	CBS 119.80	Phytopythium vexans
GCA_023337955.1	JAADXU000000000	SAMN13878530	DAOMC 242887	Pilasporangium apinafurcum
GCA_023337905.1	JAADXS000000000	SAMN13878535	CBS 552.88	Pythium amasculinum
GCA_023337915.1	JAADXQ000000000	SAMN13878537	CBS 522.74	Pythium angustatum
GCA_023337855.1	JAADXP000000000	SAMN13878538	CBS 118.80	Pythium aphanidermatum
GCA_023337825.1	JAADXO000000000	SAMN13878539	CBS 120945	Pythium apiculatum
GCA_023337875.1	JAADXN000000000	SAMN13878540	CBS 772.81	Pythium apleroticum
GCA_023337775.1	JAADXM000000000	SAMN13878541	CBS 215.80	Pythium aquatile
GCA_023337755.1	JAADXL000000000	SAMN13878542	CBS 263.38	Pythium aristosporum
GCA_023337735.1	JAADXJ000000000	SAMN13878545	JCM 30207	Pythium biforme
GCA_023337615.1	JAADXI000000000	SAMN13878546	JCM 30210	Pythium brachiatum
GCA_023337575.1	JAADXF000000000	SAMN13878553	CBS 203.85	Pythium chondricola
GCA_023337545.1	JAADXE000000000	SAMN13878554	CBS 154.64	Pythium coloratum
GCA_023337495.1	JAADXB000000000	SAMN13878560	CBS 664.79	Pythium diclinum
GCA_023336445.1	JAADWZ000000000	SAMN13878562	CBS 155.64	Pythium dissimile
GCA_023336355.1	JAADWY000000000	SAMN13878563	CBS 166.68	Pythium dissotocum
GCA_023336295.1	JAADWV000000000	SAMN13878568	CBS 220.94	Pythium folliculosum
GCA_023336255.1	JAADWU000000000	SAMN13878570	CBS 327.62	Pythium graminicola
GCA_023336285.1	JAADWT000000000	SAMN13878571	CBS 286.79	Pythium grandisporangium
GCA_023336225.1	JAADWS000000000	SAMN13878573	CBS 253.60	Pythium hydnosporum
GCA_023336345.1	JAADWR000000000	SAMN13878574	CBS 168.68	Pythium inflatum
GCA_023336105.1	JAADWL000000000	SAMN13878581	CBS 122909	Pythium lycopersicum
GCA_023336165.1	JAADWJ000000000	SAMN13878588	CBS 158.73	Pythium monospermum
GCA_023336135.1	JAADWI000000000	SAMN13878589	CBS 254.70	Pythium myriotylum
GCA_023336055.1	JAADWG000000000	SAMN13878594	CBS 382.34	Pythium oligandrum
GCA_023336015.1	JAADWE000000000	SAMN13878597	CBS 122665	Pythium ornamentatum
GCA_023336095.1	JAADWC000000000	SAMN13878603	CBS 122643	Pythium pectinolyticum
GCA_023336075.1	JAADWB000000000	SAMN13878604	CBS 289.31	Pythium periplocum
GCA_023335935.1	JAADWA000000000	SAMN13878606	CBS 135511	Pythium phragmiticola
GCA_023335925.1	JAADVZ000000000	SAMN13878607	CBS 117104	Pythium phragmitis
GCA_023336035.1	JAADVY000000000	SAMN13878609	CBS 100530	Pythium plurisporium
GCA_023335885.1	JAADVX000000000	SAMN13878611	CBS 369.79	Pythium porphyrae
GCA_023335905.1	JAADVV000000000	SAMN13878613	CBS 158.64	Pythium pyrilobum
GCA_023335895.1	JAADVT000000000	SAMN13878618	CBS 139278	Pythium rishiriense
GCA_023335855.1	JAADVR000000000	SAMN13878620	CBS 294.37	Pythium scleroteichum
GCA_023333775.1	JAASFM000000000	SAMN13878623	CBS 101876	Pythium sp. CBS 101876
GCA_023334995.1	JAADVL000000000	SAMN13878627	CBS 110030	Pythium sukuiense
GCA_023334615.1	JAADVI000000000	SAMN13878632	CBS 316.33	Pythium torulosum
GCA_023334595.1	JAADVE000000000	SAMN13878637	JCM 30206	Pythium utonaiense
GCA_023334535.1	JAADVD000000000	SAMN13878638	CBS 295.37	Pythium vanterpoolii
GCA_023334575.1	JAADVC000000000	SAMN13878640	CBS 699.83	Pythium volutum
GCA_023334545.1	JAADVB000000000	SAMN13878642	CBS 127946	Salisapilia sapeloensis

SRA Data Details

Parameter	Value
Data volume, Gbases	430
Data volume, Tbytes	0.20

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Pythium whole genome sequencing

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