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Accession: PRJNA765323 ID: 765323

Using next generation sequencing to compare gene expression of wild type and Δcsp1 mutant of bacterial plant pathogen Xylella fastidiosa strain Stag's Leap

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To investigate the role(s) of a cold shock protein homolog (Csp1) in plant pathogenic bacteria Xylella fastidiosa, we compared transcriptome profiles between wild type and a csp1 deletion mutant (Δcsp1) using long read Nanopore RNA sequencing. More...
AccessionPRJNA765323; GEO: GSE184594
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismXylella fastidiosa subsp. fastidiosa[Taxonomy ID: 644356]
Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella; Xylella fastidiosa; Xylella fastidiosa subsp. fastidiosa
PublicationsWei W et al., "Csp1, a Cold Shock Protein Homolog in Xylella fastidiosa Influences Cell Attachment, Pili Formation, and Gene Expression.", Microbiol Spectr, 2021 Dec 22;9(3):e0159121
SubmissionRegistration date: 22-Sep-2021
USDA-ARS
RelevanceUnknown
Project Data:
Resource NameNumber
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Sequence data
SRA Experiments11
Publications
PubMed1
PMC1
Other datasets
BioSample11
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases1
Data volume, Mbytes1219

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