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Accession: PRJEB31266 ID: 522726

Metagenomic sequencing of cattle

Metagenomic sequencing of the rumen of 240 cattle from Scotland

Ruminants provide essential nutrition for billions of people worldwide. The rumen is a specialised stomach adapted to the breakdown of plant-derived complex polysaccharides, and collectively the rumen microbiota encode the thousands of enzymes responsible. More...
AccessionPRJEB31266
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 15-Feb-2019
THE ROSLIN INSTITUTE
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)123535
WGS master4934
SRA Experiments244
Other datasets
BioSample5176
Assembly4934
Assembly details:
Assembly levelNumber of Assemblies
3714
1220
4934
AssemblyLevelWGSBioSampleTaxonomy
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GCA_902783425.1ContigCACZQY000000000SAMEA6151005
GCA_902783835.1ContigCACZSN000000000SAMEA6151042
GCA_902783785.1ContigCACZSH000000000SAMEA6151045
GCA_902790465.1ScaffoldCADASF000000000SAMEA6151717
GCA_902790455.1ScaffoldCADASH000000000SAMEA6151710
GCA_902790365.1ScaffoldCADARS000000000SAMEA6151700
GCA_902791265.1ScaffoldCADAVJ000000000SAMEA6151790
GCA_902792085.1ScaffoldCADAYE000000000SAMEA6151878
GCA_902791985.1ScaffoldCADAYD000000000SAMEA6151864
GCA_902791745.1ScaffoldCADAWZ000000000SAMEA6151833
GCA_902792875.1ScaffoldCADBBM000000000SAMEA6151959
GCA_902794035.1ScaffoldCADBFN000000000SAMEA6152062
GCA_902794225.1ScaffoldCADBGG000000000SAMEA6152084
GCA_902793555.1ScaffoldCADBEF000000000SAMEA6152027
GCA_902793025.1ScaffoldCADBBY000000000SAMEA6151960
GCA_902791645.1ScaffoldCADAWI000000000SAMEA6151824
GCA_902788475.1ScaffoldCADAKK000000000SAMEA6151511
GCA_902781415.1ScaffoldCACZJI000000000SAMEA6150806
GCA_902781205.1ScaffoldCACZIL000000000SAMEA6150786
GCA_902776105.1ScaffoldCACYPA000000000SAMEA6150271
GCA_902777245.1ScaffoldCACYTC000000000SAMEA6150383
GCA_902760885.1ScaffoldCACWIK000000000SAMEA6148739
GCA_902803895.1ContigCADCRQ000000000SAMEA6153052
GCA_902803655.1ContigCADCQQ000000000SAMEA6153028
SRA Data Details
ParameterValue
Data volume, Gbases6,404
Data volume, Tbytes2.90

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