metagenome (ID 321218) - BioProject

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Accession: PRJNA321218 ID: 321218

metagenome

human gut and groundwater harbor non-photosynthetic bacteria

S. C. Di Rienzi, I. Sharon, K. C. Wrighton, O. Koren, L. A. Hug, B. C. Thomas, J. More...

Accession	PRJNA321218
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	metagenome[Taxonomy ID: 256318] unclassified sequences; metagenomes; metagenome
Publications	Brown CT et al., "Measurement of bacterial replication rates in microbial communities.", Nat Biotechnol, 2016 Dec;34(12):1256-1263 Di Rienzi SC et al., "The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.", Elife, 2013 Oct 1;2:e01102
Submission	Registration date: 23-Dec-2016 None
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	13099
WGS master	109
Genomic DNA	1
SRA Experiments	3
Protein Sequences	217720
Publications
PubMed	2
PMC	2
Other datasets
BioSample	113
Assembly	110

Assembly details:

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Assembly level

Number of Assemblies

1
108
1
110

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_001917135.1	MNTT00000000		SAMN05717303	46_36	Acetobacter sp. 46_36
GCA_001917235.1	MNTZ00000000		SAMN05717309	CAG:196_36_41	Acinetobacter sp. CAG:196_36_41
GCA_001917295.1	MNUD00000000		SAMN05717313	54_46	Akkermansia sp. 54_46
GCA_001915335.1	MNQH00000000		SAMN05717213	CAG:67_53_122	Alistipes putredinis
GCA_001915255.1	MNQE00000000		SAMN05717210	56_11	Alistipes sp. 56_11
GCA_001915285.1	MNQF00000000		SAMN05717211	56_sp_Nov_56_25	Alistipes sp. 56_sp_Nov_56_25
GCA_001915305.1	MNQG00000000		SAMN05717212	58_9_plus	Alistipes sp. 58_9_plus
GCA_001917125.1	MNTU00000000		SAMN05717304	47_25	Azospirillum sp. 47_25
GCA_001917175.1	MNTV00000000		SAMN05717305	51_20	Azospirillum sp. 51_20
GCA_001915345.1	MNQI00000000		SAMN05717214	43_36	Bacteroidales bacterium 43_36
GCA_001915365.1	MNQJ00000000		SAMN05717215	43_8	Bacteroidales bacterium 43_8
GCA_001915385.1	MNQK00000000		SAMN05717216	52_46	Bacteroidales bacterium 52_46
GCA_001915415.1	MNQL00000000		SAMN05717217	55_9	Bacteroidales bacterium 55_9
GCA_001915495.1	MNQP00000000		SAMN05717221	42_12	Bacteroides finegoldii
GCA_001915515.1	MNQQ00000000		SAMN05717222	45_34	Bacteroides oleiciplenus
GCA_001915435.1	MNQM00000000		SAMN05717218	41_26	Bacteroides sp. 41_26
GCA_001915545.1	MNQS00000000		SAMN05717224	43_108	Bacteroides sp. 43_108
GCA_001915455.1	MNQN00000000		SAMN05717219	43_46	Bacteroides sp. 43_46
GCA_001915465.1	MNQO00000000		SAMN05717220	44_46	Bacteroides sp. 44_46
GCA_001915575.1	MNQT00000000		SAMN05717225	CAG:1060_57_27	Bacteroides sp. CAG:1060_57_27
GCA_001915595.1	MNQU00000000		SAMN05717226	45_41	Bacteroides uniformis
GCA_001915185.1	MNPZ00000000		SAMN05717205	56_10	Bifidobacteriales bacterium 56_10
GCA_001915215.1	MNQB00000000		SAMN05717207	62_13	Bifidobacterium bifidum
GCA_001915175.1	MNQA00000000		SAMN05717206	56_9_plus	Bifidobacterium sp. 56_9_plus
GCA_001915695.1	MNRA00000000		SAMN05717232	CAG:37_48_57	Blautia sp. CAG:37_48_57
GCA_001915615.1	MNQW00000000		SAMN05717228	43_13	Butyricimonas synergistica
GCA_001917115.1	MNTS00000000		SAMN05717302	35_41	Candidatus Melainabacteria bacterium 35_41
GCA_001917285.1	MNUB00000000		SAMN05717311	LEY3_CP_29_8	Candidatus Melainabacteria bacterium LEY3_CP_29_8
GCA_001765415.1		1	SAMN05425469	MEL.A1	Candidatus Melainabacteria bacterium MEL.A1
GCA_001915755.1	MNRC00000000		SAMN05717234	36_14	Clostridiales bacterium 36_14
GCA_001915765.1	MNRD00000000		SAMN05717235	41_12_two_minus	Clostridiales bacterium 41_12_two_minus
GCA_001915775.1	MNRE00000000		SAMN05717236	41_21_two_genomes	Clostridiales bacterium 41_21_two_genomes
GCA_001915795.1	MNRF00000000		SAMN05717237	42_27	Clostridiales bacterium 42_27
GCA_001915835.1	MNRG00000000		SAMN05717238	44_9	Clostridiales bacterium 44_9
GCA_001915845.1	MNRH00000000		SAMN05717239	45_37	Clostridiales bacterium 45_37
GCA_001915855.1	MNRI00000000		SAMN05717240	52_15	Clostridiales bacterium 52_15
GCA_001915895.1	MNRJ00000000		SAMN05717241	59_14	Clostridiales bacterium 59_14
GCA_001915915.1	MNRK00000000		SAMN05717242	Nov_37_41	Clostridiales bacterium Nov_37_41
GCA_001915995.1	MNRO00000000		SAMN05717246	26_21	Clostridium sp. 26_21
GCA_001916005.1	MNRP00000000		SAMN05717247	26_22	Clostridium sp. 26_22
GCA_001916035.1	MNRQ00000000		SAMN05717248	27_14	Clostridium sp. 27_14
GCA_001916055.1	MNRR00000000		SAMN05717249	28_12	Clostridium sp. 28_12
GCA_001916065.1	MNRS00000000		SAMN05717250	28_17	Clostridium sp. 28_17
GCA_001916075.1	MNRT00000000		SAMN05717251	29_15	Clostridium sp. 29_15
GCA_001916115.1	MNRU00000000		SAMN05717252	42_12	Clostridium sp. 42_12
GCA_001916135.1	MNRV00000000		SAMN05717253	44_14	Clostridium sp. 44_14
GCA_001916165.1	MNRX00000000		SAMN05717255	CAG:12237_41	Clostridium sp. CAG:12237_41
GCA_001915975.1	MNRN00000000		SAMN05717245	CAG:217_53_7	Clostridium sp. CAG:217_53_7
GCA_001916175.1	MNRY00000000		SAMN05717256	CAG:245_30_32	Clostridium sp. CAG:245_30_32
GCA_001916215.1	MNRZ00000000		SAMN05717257	CAG:307_30_263	Clostridium sp. CAG:307_30_263
GCA_001915935.1	MNRM00000000		SAMN05717244	CAG:349_48_7	Clostridium sp. CAG:349_48_7
GCA_001915925.1	MNRL00000000		SAMN05717243	CAG:354_28_25	Clostridium sp. CAG:354_28_25
GCA_001916225.1	MNSA00000000		SAMN05717258	CAG:62_40_43	Clostridium sp. CAG:62_40_43
GCA_001916155.1	MNRW00000000		SAMN05717254	CAG_433_25_7	Clostridium sp. CAG_433_25_7
GCA_001915225.1	MNQC00000000		SAMN05717208	60_9	Collinsella sp. 60_9
GCA_001916245.1	MNSB00000000		SAMN05717259	28_7	Coprobacillus sp. 28_7
GCA_001916255.1	MNSC00000000		SAMN05717260	CAG:235_29_27	Coprobacillus sp. CAG:235_29_27
GCA_001916295.1	MNSD00000000		SAMN05717261	43_8	Coprococcus sp. 43_8
GCA_001916315.1	MNSF00000000		SAMN05717263	CAG:131-related_45_246	Coprococcus sp. CAG:131-related_45_246
GCA_001916305.1	MNSE00000000		SAMN05717262	CAG:131_42_139	Coprococcus sp. CAG:131_42_139
GCA_001917195.1	MNTW00000000		SAMN05717306	64_16	Desulfovibrio piger
GCA_001916345.1	MNSG00000000		SAMN05717264	42_8	Dorea sp. 42_8
GCA_001915265.1	MNQD00000000		SAMN05717209	51_9	Eggerthella sp. 51_9
GCA_001915735.1	MNRB00000000		SAMN05717233	37_264	Eshraghiella crossota
GCA_001916375.1	MNSH00000000		SAMN05717265	36_13	Eubacterium sp. 36_13
GCA_001916385.1	MNSI00000000		SAMN05717266	38_16	Eubacterium sp. 38_16
GCA_001916395.1	MNSJ00000000		SAMN05717267	41_20	Eubacterium sp. 41_20
GCA_001916415.1	MNSK00000000		SAMN05717268	45_250	Eubacterium sp. 45_250
GCA_001916455.1	MNSL00000000		SAMN05717269	CAG76_36_125	Eubacterium sp. CAG76_36_125
GCA_001916555.1	MNSR00000000		SAMN05717275	61_16	Faecalibacterium prausnitzii
GCA_001916545.1	MNSQ00000000		SAMN05717274	60_20	Faecalibacterium prausnitzii
GCA_001916535.1	MNSP00000000		SAMN05717273	58_8	Faecalibacterium prausnitzii
GCA_001916575.1	MNSS00000000		SAMN05717276	CAG:74_58_120	Faecalibacterium sp. CAG:74_58_120
GCA_001916495.1	MNSO00000000		SAMN05717272	CAG:82-related_59_9	Faecalibacterium sp. CAG:82-related_59_9
GCA_001916655.1	MNSU00000000		SAMN05717278	CAG:110_56_8	Firmicutes bacterium CAG:110_56_8
GCA_001916625.1	MNSV00000000		SAMN05717279	CAG:129_59_24	Firmicutes bacterium CAG:129_59_24
GCA_001916635.1	MNSW00000000		SAMN05717280	CAG:137_57_8	Firmicutes bacterium CAG:137_57_8
GCA_001916695.1	MNSX00000000		SAMN05717281	CAG:176_59_8	Firmicutes bacterium CAG:176_59_8
GCA_001916705.1	MNSY00000000		SAMN05717282	CAG:176_63_11	Firmicutes bacterium CAG:176_63_11
GCA_001916715.1	MNSZ00000000		SAMN05717283	CAG:24053_14	Firmicutes bacterium CAG:24053_14
GCA_001916755.1	MNTA00000000		SAMN05717284	CAG:272_52_7	Firmicutes bacterium CAG:272_52_7
GCA_001916775.1	MNTB00000000		SAMN05717285	CAG:321_26_22	Firmicutes bacterium CAG:321_26_22
GCA_001916795.1	MNTC00000000		SAMN05717286	CAG:552_39_19	Firmicutes bacterium CAG:552_39_19
GCA_001916785.1	MNTD00000000		SAMN05717287	CAG:65_45_313	Firmicutes bacterium CAG:65_45_313
GCA_001916615.1	MNST00000000		SAMN05717277	CAG_194_44_15	Firmicutes bacterium CAG_194_44_15
GCA_001916475.1	MNSN00000000		SAMN05717271	37_24	Lachnospira eligens
GCA_001916465.1	MNSM00000000		SAMN05717270	37_24	Lachnospira eligens
GCA_001917275.1	MNUA00000000		SAMN05717310	CAG:611_25_7	Mycoplasma sp. CAG:611_25_7
GCA_001915655.1	MNQX00000000		SAMN05717229	43_10	Odoribacter sp. 43_10
GCA_001916835.1	MNTE00000000		SAMN05717288	57_20	Oscillibacter sp. 57_20
GCA_001916855.1	MNTF00000000		SAMN05717289	CAG:241_62_21	Oscillibacter sp. CAG:241_62_21
GCA_001915675.1	MNQY00000000		SAMN05717230	45_40	Parabacteroides sp. merdae-related_45_40
GCA_001916865.1	MNTG00000000		SAMN05717290	46_33	Phascolarctobacterium succinatutens
GCA_001915535.1	MNQR00000000		SAMN05717223	45_130	Phocaeicola plebeius
GCA_001915605.1	MNQV00000000		SAMN05717227	42_262	Phocaeicola vulgatus
GCA_001915685.1	MNQZ00000000		SAMN05717231	AG:487_50_53	Prevotella sp. AG:487_50_53
GCA_001916935.1	MNTJ00000000		SAMN05717293	43_16	Roseburia intestinalis
GCA_001916945.1	MNTK00000000		SAMN05717294	CAG:15_42_14	Roseburia inulinivorans
GCA_001916875.1	MNTH00000000		SAMN05717291	40_7	Roseburia sp. 40_7
GCA_001916965.1	MNTL00000000		SAMN05717295	CAG:10041_57	Roseburia sp. CAG:10041_57
GCA_001916975.1	MNTM00000000		SAMN05717296	CAG:18_43_25	Roseburia sp. CAG:18_43_25
GCA_001916895.1	MNTI00000000		SAMN05717292	CAG:197_41_10	Roseburia sp. CAG:197_41_10
GCA_001917015.1	MNTN00000000		SAMN05717297	43_17	Ruminococcus bicirculans (ex Wegman et al. 2014)
GCA_001917035.1	MNTP00000000		SAMN05717299	37_24	Ruminococcus sp. 37_24
GCA_001917065.1	MNTQ00000000		SAMN05717300	CAG:108-related_41_35	Ruminococcus sp. CAG:108-related_41_35
GCA_001917045.1	MNTO00000000		SAMN05717298	CAG:9-related_41_34	Ruminococcus sp. CAG:9-related_41_34
GCA_001917095.1	MNTR00000000		SAMN05717301	60_17	Subdoligranulum sp. 60_17
GCA_001917205.1	MNTX00000000		SAMN05717307	54_7	Sutterella sp. 54_7
GCA_001917215.1	MNTY00000000		SAMN05717308	63_29	Sutterella sp. 63_29
GCA_001917305.1	MNUC00000000		SAMN05717312	CAG:312_58_20	Verrucomicrobia bacterium CAG:312_58_20

SRA Data Details

Parameter	Value
Data volume, Gbases	17
Data volume, Mbytes	10483

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metagenome

human gut and groundwater harbor non-photosynthetic bacteria

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