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Accession: PRJNA675888 ID: 675888

Nanopore-based assembly of many drosophilid genomes

This work is a collaborative project aiming to broaden the scope of genomic resources for studying evolution in the model group Drosophilidae (fruit flies). More...
AccessionPRJNA675888
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsKim BY et al., "Highly contiguous assemblies of 101 drosophilid genomes.", Elife, 2021 Jul 19;10
Grants
  • "A comparative population genomic approach for high-resolution inference of natural selection in fruit flies" (Grant ID F32 GM135998, National Institute of General Medical Sciences)
  • "The prevalence of genetic introgression in speciation" (Grant ID R01 GM121750, National Institute of General Medical Sciences)
  • "Genomics of rapid adaptation in the lab and in the wild" (Grant ID R35 GM118165, National Institute of General Medical Sciences)
  • "Co-evolutionary Genetics of Host-Parasite Interactions" (Grant ID R35 GM119816, National Institute of General Medical Sciences)
  • "Molecular Genetics of Evolutionary Innovations" (Grant ID R35 GM122592, National Institute of General Medical Sciences)
  • "Advanced sequencing as a novel diagnostic tool to discover strain-level variation and function of mucosal-adherent bacteria contributing to IBD" (Grant ID K01 DK119582, National Institute of Diabetes and Digestive and Kidney Diseases)
SubmissionRegistration date: 10-Nov-2020
Stanford University
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)101
SRA Experiments164
Publications
PubMed1
PMC1
Other datasets
BioSample103
Assembly101
Assembly details:
Assembly levelNumber of Assemblies
16
85
101
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_018150985.1ContigJAECWU000000000SAMN16729672
Sapporo
GCA_018903765.1ScaffoldJAEIGO000000000SAMN16729648
mont_up-71
GCA_018150905.1ContigJAECWS000000000SAMN16729675
R42
GCA_018152915.1ContigJAECXQ000000000SAMN16729623
15010-0951.00
GCA_018148915.1ContigJAECYH000000000SAMN16729696
14024-0371.13
GCA_018151165.1ContigJAECWX000000000SAMN16729669
15182-2261.03
GCA_018148935.1ContigJAECYG000000000SAMN16729608
14023-0361.10
GCA_018153845.1ContigJAECYF000000000SAMN16729609
14024-0381.04
GCA_018151655.1ContigJAECXF000000000SAMN16729647
YAK3_mont-66
GCA_018903735.1ContigJAEIGM000000000SAMN16729652
15181-2181.03
GCA_018152295.1ContigJAECXJ000000000SAMN16729632
KB866
GCA_018152125.1ContigJAECXC000000000SAMN16729653
15182-2291.00
GCA_018152505.1ContigJAECXL000000000SAMN16729630
14027-0461.03
GCA_018150345.1ContigJAECWI000000000SAMN16729691
14030-0741.00
GCA_018150545.1ContigJAECWL000000000SAMN16729683
14024-0432.00
GCA_018904525.1ScaffoldJAEIGZ000000000SAMN16729697
14021-0224.01
GCA_018153835.1ContigJAECYE000000000SAMN16729698
14026-0451.02
GCA_018152265.1ContigJAECXK000000000SAMN16729631
14025-0441.05
GCA_018901825.1ContigJAEIFK000000000SAMN16729688
fst01
GCA_018153365.1ContigJAECXW000000000SAMN16729615
14029-0011.01
GCA_018153295.1ContigJAECXY000000000SAMN16729613
15287-2541.00
GCA_018152165.1ContigJAECXE000000000SAMN16729649
kari17
GCA_018153375.1ContigJAECXZ000000000SAMN16729612
15111.1731.12
GCA_018903935.1ContigJAEIFP000000000SAMN16729645
jp01i
GCA_018152175.1ContigJAECXH000000000SAMN16729634
14028-0671.01
GCA_018152535.1ContigJAECXM000000000SAMN16729629
14028-0561.14
GCA_018153305.1ContigJAECXX000000000SAMN16729614
SaPa58
GCA_018903485.1ScaffoldJAEIGF000000000SAMN16729673
1240J8
GCA_018153275.1ContigJAECXU000000000SAMN16729617
palQ-isoG
GCA_018153235.1ContigJAECXV000000000SAMN16729616
mal0-isoC
GCA_018904475.1ScaffoldJAEIGY000000000SAMN16729699
14021-0241.01
GCA_018904365.1ScaffoldJAEIGS000000000SAMN16729610
14021-0231.36
GCA_018153725.1ContigJAECYD000000000SAMN16729700
15081-1352.22
GCA_018904325.1ContigJAEIFX000000000SAMN16729622
DKPHETFM01
GCA_018903615.1ScaffoldJAEIGI000000000SAMN16729666
14041-0831.00
GCA_018151105.1ContigJAECWW000000000SAMN16729671
BZ-5 IFL
GCA_018150695.1ContigJAECWM000000000SAMN16729682
MT-04
GCA_018153455.1ContigJAECYA000000000SAMN16729611
par2-isoB
GCA_018152135.1ContigJAECXG000000000SAMN16729646
14030-0771.06
GCA_018151315.1ContigJAECWZ000000000SAMN16729664
14030-0771.12
GCA_018904465.1ContigJAEIGX000000000SAMN16729701
14011-0111.01
GCA_018151275.1ContigJAECWY000000000SAMN16729667
14045-0901.02
GCA_018150935.1ContigJAECWR000000000SAMN16729676
iso-A1 I-9
GCA_018153145.1ContigJAECXT000000000SAMN16729618
VT04-31
GCA_018153035.1ContigJAECXR000000000SAMN16729619
Wau 125
GCA_018904455.1ContigJAEIGW000000000SAMN16729702
14011-0121.94
GCA_018150725.1ContigJAECWN000000000SAMN16729680
quad-TMU
GCA_018903745.1ContigJAEIGN000000000SAMN16729650
kari30
GCA_018150835.1ContigJAECWQ000000000SAMN16729677
ISZ-isoB I-10
GCA_018152115.1ContigJAECXI000000000SAMN16729633
14029-0021.01
GCA_018153105.1ContigJAECXS000000000SAMN16729620
EH091 iso-C L_3
GCA_018903575.1ContigJAEIGH000000000SAMN16729668
14045-0911.00
GCA_018904445.1ScaffoldJAEIGV000000000SAMN16729703
14021-0248.01
GCA_018904415.1ScaffoldJAEIGU000000000SAMN16729704
14021-0251.006
GCA_018150735.1ContigJAECWO000000000SAMN16729679
14030-0761.01
GCA_018901795.1ContigJAEIFG000000000SAMN16729694
st01m
GCA_018904355.1ContigJAEIFY000000000SAMN16729621
DKPTOMS02
GCA_018150375.1ContigJAECWJ000000000SAMN16729685
14043-0871.01
GCA_018903505.1ContigJAEIGG000000000SAMN16729670
Ksnacht
GCA_018150325.1ContigJAECWG000000000SAMN16729695
L1
GCA_018150745.1ContigJAECWP000000000SAMN16729678
14030-0791.01
GCA_018152695.1ContigJAECXN000000000SAMN16729628
IR98-3 E-12201
GCA_018903635.1ContigJAEIGK000000000SAMN16729661
CT02
GCA_018903625.1ContigJAEIGJ000000000SAMN16729662
273.3
GCA_018151095.1ContigJAECWV000000000SAMN16744625
14028-0691.9
GCA_018150885.1ContigJAECWT000000000SAMN16729674
Divibare2
GCA_018151085.1ContigJAECWH000000000SAMN16729692
14030-0801.00
GCA_018150405.1ContigJAECWK000000000SAMN16729684
CKM15-L1
GCA_018153695.1ContigJAECYC000000000SAMN16729705
15010-1051.87
GCA_018153465.1ContigJAECYB000000000SAMN16729706
14030-0811.00
GCA_018903445.1ScaffoldJAEIGE000000000SAMN16729681
14030-0811.17
GCA_018904385.1ContigJAEIGT000000000SAMN16729707
14021-0261.01
GCA_018903435.1ContigJAEIFJ000000000SAMN16729689
nc01v
GCA_018904275.1ScaffoldJAEIGQ000000000SAMN16729635
Guizhou062018LC
GCA_018904265.1ContigJAEIFV000000000SAMN16729637
UCKTSapporo052019LC
GCA_018904285.1ContigJAEIFW000000000SAMN16729636
UCKTSapporo052019LM
GCA_018904225.1ContigJAEIFT000000000SAMN16729639
MMSapporo052014LM
GCA_018904235.1ContigJAEIFU000000000SAMN16729638
UCILTSSapporo052019LS
GCA_018901835.1ContigJAEIFL000000000SAMN16729627
TMU-2019
GCA_018152825.1ContigJAECXO000000000SAMN16729625
iso-CA-L1
GCA_018904305.1ContigJAEIGR000000000SAMN16729626
iso-CA-L1
GCA_018152965.1ContigJAECXP000000000SAMN16729624
iso-CA-L1
GCA_018151435.1ContigJAECXB000000000SAMN16729659
BS06
GCA_018904165.1ContigJAEIFS000000000SAMN16729640
jd01cam
GCA_018903675.1ContigJAEIFN000000000SAMN16729656
jd01cap
GCA_018903715.1ScaffoldJAEIGL000000000SAMN16729654
jd01d
GCA_018903695.1ContigJAEIFO000000000SAMN16729655
jd01gab
GCA_018904095.1ScaffoldJAEIGP000000000SAMN16729642
jd01ghe
GCA_018904605.1ScaffoldJAEIHB000000000SAMN16729663
BS02
GCA_018904595.1ScaffoldJAEIHA000000000SAMN16729665
RCR04
GCA_018903395.1ScaffoldJAEIGC000000000SAMN16729687
16GNV01
GCA_018159335.1ContigJAECYI000000000SAMN16729658
CDD18
GCA_018151445.1ContigJAECXD000000000SAMN16729651
18BSZ10
GCA_018901885.1ContigJAEIFM000000000SAMN16729657
jd01k
GCA_018901815.1ContigJAEIFI000000000SAMN16729690
jd01l
GCA_018903425.1ScaffoldJAEIGD000000000SAMN16729686
st01n
GCA_018904035.1ContigJAEIFZ000000000SAMN16729644
jd01o
GCA_018901805.1ContigJAEIFH000000000SAMN16729693
st01t
GCA_018904105.1ContigJAEIFR000000000SAMN16729641
jd01t
GCA_018151455.1ContigJAECXA000000000SAMN16729660
car7-4
GCA_018904025.1ContigJAEIFQ000000000SAMN16729643
jd01v
SRA Data Details
ParameterValue
Data volume, Gbases1,831
Data volume, Tbytes1.26
Related Project Category: RefseqGenbank
PRJNA728747 : Refseq

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