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Accession: PRJNA530256 ID: 530256

Oncorhynchus nerka (sockeye salmon)

Sockeye salmon genome assembly and annotation

See Genome Information for Oncorhynchus nerka
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23 additional projects are related by organism.
The goal of this project was to sequence and assemble a reference genome assembly for sockeye salmon using a combination of sequencing technologies and assembly programs. More...
AccessionPRJNA530256
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismOncorhynchus nerka[Taxonomy ID: 8023]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus; Oncorhynchus nerka
PublicationsChristensen KA et al., "Correction: The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome.", PLoS One, 2021;16(12):e0262189
SubmissionRegistration date: 30-May-2019
Fisheries and Oceans Canada
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)60
WGS master2
SRA Experiments170
Publications
PubMed1
PMC1
Other datasets
BioSample162
Assembly2
Assembly details:
Assembly levelNumber of Assemblies
Chromosome Chromosome
Total
2
2
SRA Data Details
ParameterValue
Data volume, Gbases6,276
Data volume, Tbytes2.81
Related RefSeq Projects
PRJNA548514 : Oncorhynchus nerka RefSeq Raw sequence reads
PRJNA1106039 : Sockeye salmon RefSeq BioProject

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