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Accession: PRJNA248064 ID: 248064

Public Health England Pathogen Sequencing

Whole genome sequencing data from Public Health England.
AccessionPRJNA248064
TypeUmbrella project
KeywordGMI
Publications
  • Ashton P et al.,"Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa", Genome Medicine, 2017;9(92)
SubmissionRegistration date: 19-May-2014
Public Health England
NCBI Links
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)116149
WGS master115184
Genomic DNA235
SRA Experiments150050
Protein Sequences375534
Publications
PubMed3
PMC3
Other datasets
BioSample150344
Assembly115373
SRA Data Details
ParameterValue
Data volume, Gbases64,455
Data volume, Tbytes27.66
This project encompasses the following 10 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Complete genome
Contigs
No data links
Total

2
6
2
10
BioProject
accession
Assembly
level
NameTitle
PRJNA315192 Complete genomeBacteriaRoutine surveillance of E. coli and Shigella by Public Health England (Health Protection Agency)
PRJNA475191 ContigsCampylobacter jejuniSentinel surveillance of Campylobacter (Public Health England)
PRJNA505131 ContigsCampylobacter jejuniRoutine Sequencing of Campylobacter species (Public Health England)
PRJNA259645 No data linksEscherichia coli O157Public Health England - Escherichia coli O157 (Public Health England)
PRJNA248042 ContigsEscherichia coli O157:H7National Surveillance of STEC O157:H7 in England (Health Protection Agency)
List all 10 'Genome sequencing' projects...

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