A master bioproject to bring together all high-throughput DNA and RNA sequencing data, assemblies and related analyses, developed by the Penn State Program in the Molecular Biology of Cacao.
| Accession | PRJNA936437 |
| Type | Umbrella project |
| Submission | Registration date: 18-Feb-2023
Penn State University |
| Related Resources | |
| Relevance | Agricultural |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 10 |
| SRA Experiments | 996 |
| Protein Sequences | 27910 |
| Publications |
| PubMed | 3 |
| PMC | 1 |
| Other datasets |
| BioSample | 945 |
| GEO DataSets | 1 |
| Assembly | 1 |
Theobroma cacao encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : SRA or Trace No data links Total |
2
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA933172 | SRA or Trace | Cacao Gene Atlas | Cacao Gene Atlas (Cacao Gene Atlas Consortium) | | PRJNA956872 | No data links | Theobroma cacao | Theobroma cacao strain:Sca6 | isolate:Scavina 6 Genome sequencing and assembly (Penn State University) | | PRJNA742476 | SRA or Trace | Transcriptomic profiles of cacao cell cultures under different light regimes | Transcriptomic profiles of cacao cell cultures under different light regimes (Universidad de Antioquia) |
|
| other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA558793 | Theobroma cacao | Theobroma cacao Disease Resistance : Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops (Claude dePamphilis Lab, Penn...) |
|
| transcriptome | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA931994 | Theobroma cacao | Theobroma cacao Gene Atlas: Developmental and Associated Transcriptomes (Penn State University) | | PRJNA476877 | Theobroma cacao | Resistant and susceptible cacao varieties exhibit defense gene polymorphism and different responses to Phytophthora megakarya inoculation (Guiltinan Lab, Plant Molecular...) |
|