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Genome Information for Cuculus canorus
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The common cuckoo is an iconic brood parasite that has long been identified as an evolutionary model system to study co-evolutionary arms race dynamics between hosts and parasites. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics linked reads at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Bettina Haase, and supervised by Arang Rhie, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was by Jochen Wolf and Tom Gilbert. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562200 |
| Type | Umbrella project |
| Organism | Cuculus canorus[Taxonomy ID: 55661] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus; Cuculus canorus |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 50438 |
| WGS master | 2 |
| Transcript | 50203 |
| SRA Experiments | 13 |
| Protein Sequences | 43763 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA562015 | Chromosomes | Cuculus canorus | Cuculus canorus (Common cuckoo) genome, bCucCan1, primary haplotype (Vertebrate Genomes Project) | | PRJNA562016 | Scaffolds | Cuculus canorus | Cuculus canorus (Common cuckoo) genome, bCucCan1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA939222 | Chromosomes | Cuculus canorus | Cuculus canorus isolate:bCucCan1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008121 | SRA or Trace | Cuculus canorus (Common cuckoo) genome, bCucCan1, sequence data. | Cuculus canorus (Common cuckoo) genome, bCucCan1, sequence data. (G10K) |
|